sitkTransformixImageFilterImpl.h

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#ifndef sitktransformiximagefilterimpl_h
#define sitktransformiximagefilterimpl_h
 
// SimpleITK
#include "sitkTransformixImageFilter.h"
#include "sitkMemberFunctionFactory.h"
 
// Transformix
#include "itkTransformixFilter.h"
#include "elxParameterObject.h"
 
namespace itk {
  namespace simple {
 
class SITKElastix_HIDDEN TransformixImageFilter::TransformixImageFilterImpl
{
public:
  TransformixImageFilterImpl();
  ~TransformixImageFilterImpl();
 
  typedef TransformixImageFilterImpl Self;
 
  typedef elastix::ParameterObject                       ParameterObjectType;
  typedef ParameterObjectType::Pointer                   ParameterObjectPointer;
  typedef ParameterObjectType::ParameterMapType          ParameterMapType;
  typedef ParameterObjectType::ParameterMapVectorType    ParameterMapVectorType;
  typedef ParameterMapType::iterator                     ParameterMapIterator;
  typedef ParameterMapType::const_iterator               ParameterMapConstIterator;
  typedef itk::ParameterFileParser                       ParameterFileParserType;
  typedef ParameterFileParserType::Pointer               ParameterFileParserPointer;
  typedef ParameterObjectType::ParameterKeyType          ParameterKeyType;
  typedef ParameterObjectType::ParameterValueType        ParameterValueType;
  typedef ParameterObjectType::ParameterValueVectorType  ParameterValueVectorType;
 
  std::string GetName() const;
 
  void SetMovingImage( const Image& movingImage );
  Image& GetMovingImage();
  void RemoveMovingImage();
 
  void SetFixedPointSetFileName( const std::string movingPointSetFileName );
  std::string GetFixedPointSetFileName();
  void RemoveFixedPointSetFileName();
 
  void SetComputeSpatialJacobian( const bool );
  bool GetComputeSpatialJacobian();
  void ComputeSpatialJacobianOn();
  void ComputeSpatialJacobianOff();
 
  void SetComputeDeterminantOfSpatialJacobian( const bool );
  bool GetComputeDeterminantOfSpatialJacobian();
  void ComputeDeterminantOfSpatialJacobianOn();
  void ComputeDeterminantOfSpatialJacobianOff();
 
  void SetComputeDeformationField( bool );
  bool GetComputeDeformationField();
  void ComputeDeformationFieldOn();
  void ComputeDeformationFieldOff();
 
  void SetOutputDirectory( const std::string outputDirectory );
  std::string GetOutputDirectory();
  void RemoveOutputDirectory();
 
  void SetLogFileName( const std::string logFileName );
  std::string GetLogFileName();
  void RemoveLogFileName();
 
  void SetLogToFile( const bool logToFile );
  bool GetLogToFile();
  void LogToFileOn();
  void LogToFileOff();
 
  void SetLogToConsole( const bool logToConsole );
  bool GetLogToConsole();
  void LogToConsoleOn();
  void LogToConsoleOff();
 
  void SetTransformParameterMap( const std::vector< std::map< std::string, std::vector< std::string > > > parameterMapVector );
  void SetTransformParameterMap( const std::map< std::string, std::vector< std::string > > parameterMap );
  void AddTransformParameterMap( const std::map< std::string, std::vector< std::string > > parameterMap );
  std::vector< std::map< std::string, std::vector< std::string > > > GetTransformParameterMap();
  unsigned int GetNumberOfTransformParameterMaps();
 
  void SetTransformParameter( const std::string key, const std::string value );
  void SetTransformParameter( const std::string key, const std::vector< std::string > value );
  void SetTransformParameter( const unsigned int index, const std::string key, const std::string value );
  void SetTransformParameter( const unsigned int index, const std::string key, const std::vector< std::string > value );
  void AddTransformParameter( const std::string key, const std::string value );
  void AddTransformParameter( const unsigned int index, const std::string key, const std::string value );
  std::vector< std::string > GetTransformParameter( const std::string key );
  std::vector< std::string > GetTransformParameter( const unsigned int index, const std::string key );
  void RemoveTransformParameter( const std::string key );
  void RemoveTransformParameter( const unsigned int index, const std::string key );
 
  std::map< std::string, std::vector< std::string > > ReadParameterFile( const std::string filename );
  void WriteParameterFile( const std::map< std::string, std::vector< std::string > > parameterMap, const std::string parameterFileName );
 
  void PrintParameterMap();
  void PrintParameterMap( const std::map< std::string, std::vector< std::string > > parameterMap );
  void PrintParameterMap( const std::vector< std::map< std::string, std::vector< std::string > > > parameterMapVector );
 
  Image Execute();
 
  Image GetResultImage();
  Image GetDeformationField();
 
  bool IsEmpty( const Image& image );
 
  // Definitions for SimpleITK member factory
  typedef Image ( Self::*MemberFunctionType )();
  template< class TMovingImage > Image ExecuteInternal();
  friend struct detail::MemberFunctionAddressor< MemberFunctionType >;
  std::unique_ptr< detail::MemberFunctionFactory< MemberFunctionType > > m_MemberFactory;
 
  Image                   m_MovingImage;
  Image                   m_ResultImage;
  Image                   m_DeformationField;
 
  ParameterMapVectorType  m_TransformParameterMapVector;
 
  bool                    m_ComputeSpatialJacobian;
  bool                    m_ComputeDeterminantOfSpatialJacobian;
  bool                    m_ComputeDeformationField;
  std::string             m_MovingPointSetFileName;
 
  std::string             m_OutputDirectory;
  std::string             m_LogFileName;
 
  bool                    m_LogToConsole;
  bool                    m_LogToFile;
};
 
} // end namespace simple
} // end namespace itk
 
#endif // sitktransformiximagefilterimpl_h