sitkTransformixImageFilter.h

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/*=========================================================================
*
*  Copyright NumFOCUS
*
*  Licensed under the Apache License, Version 2.0 (the "License");
*  you may not use this file except in compliance with the License.
*  You may obtain a copy of the License at
*
*         http://www.apache.org/licenses/LICENSE-2.0.txt
*
*  Unless required by applicable law or agreed to in writing, software
*  distributed under the License is distributed on an "AS IS" BASIS,
*  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
*  See the License for the specific language governing permissions and
*  limitations under the License.
*
*=========================================================================*/
#ifndef sitkTransformixImageFilter_h
#define sitkTransformixImageFilter_h
 
#include "sitkElastixTransformixWrappers.h"
#include "sitkCommon.h"
#include "sitkImage.h"
 
#include <map>
#include <memory> // For unique_ptr.
#include <string>
#include <vector>
 
namespace itk {
  namespace simple {
 
class SITKElastix_EXPORT TransformixImageFilter
{
public:
 
  TransformixImageFilter();
  ~TransformixImageFilter();
 
  typedef TransformixImageFilter Self;
 
  typedef std::string                                             ParameterKeyType;
  typedef std::string                                             ParameterValueType;
  typedef std::vector< ParameterValueType >                       ParameterValueVectorType;
  typedef ParameterValueVectorType::iterator                      ParameterValueVectorIterator;
  typedef std::map< ParameterKeyType, ParameterValueVectorType >  ParameterMapType;
  typedef std::vector< ParameterMapType >                         ParameterMapVectorType;
  typedef ParameterMapType::iterator                              ParameterMapIterator;
  typedef ParameterMapType::const_iterator                        ParameterMapConstIterator;
 
  std::string GetName() const;
 
  SITK_RETURN_SELF_TYPE_HEADER SetMovingImage( const Image& movingImage );
  Image& GetMovingImage();
  SITK_RETURN_SELF_TYPE_HEADER RemoveMovingImage();
 
  SITK_RETURN_SELF_TYPE_HEADER SetFixedPointSetFileName( const std::string movingPointSetFileName );
  std::string GetFixedPointSetFileName();
  SITK_RETURN_SELF_TYPE_HEADER RemoveFixedPointSetFileName();
 
  SITK_RETURN_SELF_TYPE_HEADER SetComputeSpatialJacobian( const bool );
  bool GetComputeSpatialJacobian();
  SITK_RETURN_SELF_TYPE_HEADER ComputeSpatialJacobianOn();
  SITK_RETURN_SELF_TYPE_HEADER ComputeSpatialJacobianOff();
 
  SITK_RETURN_SELF_TYPE_HEADER SetComputeDeterminantOfSpatialJacobian( const bool );
  bool GetComputeDeterminantOfSpatialJacobian();
  SITK_RETURN_SELF_TYPE_HEADER ComputeDeterminantOfSpatialJacobianOn();
  SITK_RETURN_SELF_TYPE_HEADER ComputeDeterminantOfSpatialJacobianOff();
 
  SITK_RETURN_SELF_TYPE_HEADER SetComputeDeformationField( bool );
  bool GetComputeDeformationField();
  SITK_RETURN_SELF_TYPE_HEADER ComputeDeformationFieldOn();
  SITK_RETURN_SELF_TYPE_HEADER ComputeDeformationFieldOff();
 
  SITK_RETURN_SELF_TYPE_HEADER SetOutputDirectory( const std::string outputDirectory );
  std::string GetOutputDirectory();
  SITK_RETURN_SELF_TYPE_HEADER RemoveOutputDirectory();
 
  SITK_RETURN_SELF_TYPE_HEADER SetLogFileName( const std::string logFileName );
  std::string GetLogFileName();
  SITK_RETURN_SELF_TYPE_HEADER RemoveLogFileName();
 
  SITK_RETURN_SELF_TYPE_HEADER SetLogToFile( const bool logToFile );
  bool GetLogToFile();
  SITK_RETURN_SELF_TYPE_HEADER LogToFileOn();
  SITK_RETURN_SELF_TYPE_HEADER LogToFileOff();
 
  SITK_RETURN_SELF_TYPE_HEADER SetLogToConsole( const bool logToConsole );
  bool GetLogToConsole();
  SITK_RETURN_SELF_TYPE_HEADER LogToConsoleOn();
  SITK_RETURN_SELF_TYPE_HEADER LogToConsoleOff();
 
  SITK_RETURN_SELF_TYPE_HEADER SetTransformParameterMap( const std::vector< std::map< std::string, std::vector< std::string > > > parameterMapVector );
  SITK_RETURN_SELF_TYPE_HEADER SetTransformParameterMap( const std::map< std::string, std::vector< std::string > > parameterMap );
  SITK_RETURN_SELF_TYPE_HEADER AddTransformParameterMap( const std::map< std::string, std::vector< std::string > > parameterMap );
  std::vector< std::map< std::string, std::vector< std::string > > > GetTransformParameterMap();
   unsigned int GetNumberOfTransformParameterMaps();
 
  SITK_RETURN_SELF_TYPE_HEADER SetTransformParameter( const std::string key, const std::string value );
  SITK_RETURN_SELF_TYPE_HEADER SetTransformParameter( const std::string key, const std::vector< std::string > value );
  SITK_RETURN_SELF_TYPE_HEADER SetTransformParameter( const unsigned int index, const std::string key, const std::string value );
  SITK_RETURN_SELF_TYPE_HEADER SetTransformParameter( const unsigned int index, const std::string key, const std::vector< std::string > value );
  SITK_RETURN_SELF_TYPE_HEADER AddTransformParameter( const std::string key, const std::string value );
  SITK_RETURN_SELF_TYPE_HEADER AddTransformParameter( const unsigned int index, const std::string key, const std::string value );
  std::vector< std::string > GetTransformParameter( const std::string key );
  std::vector< std::string > GetTransformParameter( const unsigned int index, const std::string key );
  SITK_RETURN_SELF_TYPE_HEADER RemoveTransformParameter( const std::string key );
  SITK_RETURN_SELF_TYPE_HEADER RemoveTransformParameter( const unsigned int index, const std::string key );
 
  std::map< std::string, std::vector< std::string > > ReadParameterFile( const std::string parameterFileName );
  SITK_RETURN_SELF_TYPE_HEADER WriteParameterFile( const std::map< std::string, std::vector< std::string > > parameterMap, const std::string parameterFileName );
 
  SITK_RETURN_SELF_TYPE_HEADER PrintParameterMap();
  SITK_RETURN_SELF_TYPE_HEADER PrintParameterMap( const std::map< std::string, std::vector< std::string > > parameterMap );
  SITK_RETURN_SELF_TYPE_HEADER PrintParameterMap( const std::vector< std::map< std::string, std::vector< std::string > > > parameterMapVector );
 
  Image Execute();
 
  Image GetResultImage();
  Image GetDeformationField();
 
private:
 
  class TransformixImageFilterImpl;
  const std::unique_ptr<TransformixImageFilterImpl> m_Pimple;
 
};
 
// Procedural Interface
SITKElastix_EXPORT Image Transformix( const Image& movingImage, const std::map< std::string, std::vector< std::string > > parameterMap, const bool logToConsole = false, const std::string outputDirectory = "." );
SITKElastix_EXPORT Image Transformix( const Image& movingImage, const std::vector< std::map< std::string, std::vector< std::string > > > parameterMapVector, const bool logToConsole = false, const std::string outputDirectory = "." );
 
} // end namespace simple
} // end namespace itk
 
#endif // sitkTransformixImageFilter_h