SimpleITK
1.2.4
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Apply a colormap to the contours (outlines) of each object in a label map and superimpose it on top of the feature image. More...
#include <sitkLabelMapContourOverlayImageFilter.h>
Public Types | |
enum | ContourTypeType { PLAIN, CONTOUR, SLICE_CONTOUR } |
typedef LabelPixelIDTypeList | PixelIDTypeList |
enum | PriorityType { HIGH_LABEL_ON_TOP, LOW_LABEL_ON_TOP } |
typedef LabelMapContourOverlayImageFilter | Self |
Public Types inherited from itk::simple::ImageFilter< 0 > | |
typedef ImageFilter | Self |
Public Types inherited from itk::simple::ProcessObject | |
typedef ProcessObject | Self |
Public Member Functions | |
Image | Execute (const Image &labelMapImage, const Image &featureImage) |
Image | Execute (const Image &labelMapImage, const Image &featureImage, double opacity, const std::vector< unsigned int > &dilationRadius, const std::vector< unsigned int > &contourThickness, unsigned int sliceDimension, LabelMapContourOverlayImageFilter::ContourTypeType contourType, LabelMapContourOverlayImageFilter::PriorityType priority, std::vector< uint8_t > colormap) |
std::vector< uint8_t > | GetColormap () const |
std::vector< unsigned int > | GetContourThickness () const |
ContourTypeType | GetContourType () const |
std::vector< unsigned int > | GetDilationRadius () const |
std::string | GetName () const |
double | GetOpacity () const |
PriorityType | GetPriority () const |
unsigned int | GetSliceDimension () const |
LabelMapContourOverlayImageFilter () | |
Self & | SetColormap (std::vector< uint8_t > Colormap) |
Self & | SetContourThickness (const std::vector< unsigned int > &ContourThickness) |
Self & | SetContourType (ContourTypeType ContourType) |
Self & | SetDilationRadius (const std::vector< unsigned int > &DilationRadius) |
Self & | SetDilationRadius (unsigned int value) |
Self & | SetOpacity (double Opacity) |
Self & | SetPriority (PriorityType Priority) |
Self & | SetSliceDimension (unsigned int SliceDimension) |
std::string | ToString () const |
virtual | ~LabelMapContourOverlayImageFilter () |
Public Member Functions inherited from itk::simple::ImageFilter< 0 > | |
ImageFilter () | |
virtual | ~ImageFilter ()=0 |
Public Member Functions inherited from itk::simple::ProcessObject | |
virtual void | Abort () |
virtual int | AddCommand (itk::simple::EventEnum event, itk::simple::Command &cmd) |
Add a Command Object to observer the event. More... | |
virtual float | GetProgress () const |
An Active Measurement of the progress of execution. More... | |
virtual bool | HasCommand (itk::simple::EventEnum event) const |
Query of this object has any registered commands for event. More... | |
ProcessObject () | |
virtual void | RemoveAllCommands () |
Remove all registered commands. More... | |
virtual | ~ProcessObject () |
virtual void | DebugOn () |
virtual void | DebugOff () |
virtual bool | GetDebug () const |
virtual void | SetDebug (bool debugFlag) |
virtual void | SetNumberOfThreads (unsigned int n) |
virtual unsigned int | GetNumberOfThreads () const |
Private Types | |
typedef Image(Self::* | MemberFunctionType) (const Image *labelMapImage, const Image *featureImage) |
Private Member Functions | |
template<class TImageType1 , class TImageType2 > | |
Image | DualExecuteInternal (const Image *labelMapImage, const Image *featureImage) |
Private Attributes | |
std::vector< uint8_t > | m_Colormap |
std::vector< unsigned int > | m_ContourThickness |
ContourTypeType | m_ContourType |
std::vector< unsigned int > | m_DilationRadius |
nsstd::auto_ptr< detail::DualMemberFunctionFactory< MemberFunctionType > > | m_DualMemberFactory |
double | m_Opacity |
PriorityType | m_Priority |
unsigned int | m_SliceDimension |
Friends | |
struct | detail::DualExecuteInternalAddressor< MemberFunctionType > |
Additional Inherited Members | |
Static Public Member Functions inherited from itk::simple::ProcessObject | |
static bool | GetGlobalDefaultDebug () |
static void | GlobalDefaultDebugOff () |
static void | GlobalDefaultDebugOn () |
static void | SetGlobalDefaultDebug (bool debugFlag) |
static void | GlobalWarningDisplayOn () |
static void | GlobalWarningDisplayOff () |
static void | SetGlobalWarningDisplay (bool flag) |
static bool | GetGlobalWarningDisplay () |
static void | SetGlobalDefaultNumberOfThreads (unsigned int n) |
static unsigned int | GetGlobalDefaultNumberOfThreads () |
static double | GetGlobalDefaultCoordinateTolerance () |
Access the global tolerance to determine congruent spaces. More... | |
static void | SetGlobalDefaultCoordinateTolerance (double) |
Access the global tolerance to determine congruent spaces. More... | |
static double | GetGlobalDefaultDirectionTolerance () |
Access the global tolerance to determine congruent spaces. More... | |
static void | SetGlobalDefaultDirectionTolerance (double) |
Access the global tolerance to determine congruent spaces. More... | |
Protected Member Functions inherited from itk::simple::ProcessObject | |
virtual unsigned long | AddITKObserver (const itk::EventObject &, itk::Command *) |
virtual itk::ProcessObject * | GetActiveProcess () |
virtual void | OnActiveProcessDelete () |
virtual void | onCommandDelete (const itk::simple::Command *cmd) SITK_NOEXCEPT |
virtual void | PreUpdate (itk::ProcessObject *p) |
virtual void | RemoveITKObserver (EventCommand &e) |
Protected Member Functions inherited from itk::simple::NonCopyable | |
NonCopyable () | |
Static Protected Member Functions inherited from itk::simple::ImageFilter< 0 > | |
static void | FixNonZeroIndex (TImageType *img) |
Static Protected Member Functions inherited from itk::simple::ProcessObject | |
template<class TImageType > | |
static TImageType::ConstPointer | CastImageToITK (const Image &img) |
template<class TImageType > | |
static Image | CastITKToImage (TImageType *img) |
template<class TPixelType , unsigned int VImageDimension, unsigned int VLength, template< typename, unsigned int > class TVector> | |
static Image | CastITKToImage (itk::Image< TVector< TPixelType, VLength >, VImageDimension > *img) |
static const itk::EventObject & | GetITKEventObject (EventEnum e) |
template<typename T > | |
static std::ostream & | ToStringHelper (std::ostream &os, const T &v) |
static std::ostream & | ToStringHelper (std::ostream &os, const char &v) |
static std::ostream & | ToStringHelper (std::ostream &os, const signed char &v) |
static std::ostream & | ToStringHelper (std::ostream &os, const unsigned char &v) |
Apply a colormap to the contours (outlines) of each object in a label map and superimpose it on top of the feature image.
The feature image is typically the image from which the labeling was produced. Use the SetInput function to set the LabelMap , and the SetFeatureImage function to set the feature image.
Apply a colormap to a label map and put it on top of the input image. The set of colors is a good selection of distinct colors. The opacity of the label map can be defined by the user. A background label produce a gray pixel with the same intensity than the input one.
This implementation was taken from the Insight Journal paper: https://hdl.handle.net/1926/584 or http://www.insight-journal.org/browse/publication/176
Definition at line 53 of file sitkLabelMapContourOverlayImageFilter.h.
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Setup for member function dispatching
Definition at line 163 of file sitkLabelMapContourOverlayImageFilter.h.
Define the pixels types supported by this filter
Definition at line 65 of file sitkLabelMapContourOverlayImageFilter.h.
Definition at line 55 of file sitkLabelMapContourOverlayImageFilter.h.
Enumerator | |
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PLAIN | |
CONTOUR | |
SLICE_CONTOUR |
Definition at line 113 of file sitkLabelMapContourOverlayImageFilter.h.
Enumerator | |
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HIGH_LABEL_ON_TOP | |
LOW_LABEL_ON_TOP |
Definition at line 127 of file sitkLabelMapContourOverlayImageFilter.h.
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Destructor
itk::simple::LabelMapContourOverlayImageFilter::LabelMapContourOverlayImageFilter | ( | ) |
Default Constructor that takes no arguments and initializes default parameters
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Image itk::simple::LabelMapContourOverlayImageFilter::Execute | ( | const Image & | labelMapImage, |
const Image & | featureImage | ||
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Execute the filter on the input image
Image itk::simple::LabelMapContourOverlayImageFilter::Execute | ( | const Image & | labelMapImage, |
const Image & | featureImage, | ||
double | opacity, | ||
const std::vector< unsigned int > & | dilationRadius, | ||
const std::vector< unsigned int > & | contourThickness, | ||
unsigned int | sliceDimension, | ||
LabelMapContourOverlayImageFilter::ContourTypeType | contourType, | ||
LabelMapContourOverlayImageFilter::PriorityType | priority, | ||
std::vector< uint8_t > | colormap | ||
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Execute the filter on the input image with the given parameters
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Definition at line 145 of file sitkLabelMapContourOverlayImageFilter.h.
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Set/Get the contour thickness - 1 by default.
Definition at line 101 of file sitkLabelMapContourOverlayImageFilter.h.
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Set/Get the overlay type - CONTOUR is used by default.
Definition at line 125 of file sitkLabelMapContourOverlayImageFilter.h.
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Set/Get the object dilation radius - 0 by default.
Definition at line 91 of file sitkLabelMapContourOverlayImageFilter.h.
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Name of this class
Implements itk::simple::ProcessObject.
Definition at line 147 of file sitkLabelMapContourOverlayImageFilter.h.
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Set/Get the opacity of the colored label image. The value must be between 0 and 1
Definition at line 77 of file sitkLabelMapContourOverlayImageFilter.h.
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Set/Get the object priority - HIGH_LABEL_ON_TOP by default.
Definition at line 137 of file sitkLabelMapContourOverlayImageFilter.h.
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Set/Get the slice dimension - defaults to image dimension - 1.
Definition at line 111 of file sitkLabelMapContourOverlayImageFilter.h.
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Definition at line 141 of file sitkLabelMapContourOverlayImageFilter.h.
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Set/Get the contour thickness - 1 by default.
Definition at line 96 of file sitkLabelMapContourOverlayImageFilter.h.
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Set/Get the overlay type - CONTOUR is used by default.
Definition at line 119 of file sitkLabelMapContourOverlayImageFilter.h.
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Set/Get the object dilation radius - 0 by default.
Definition at line 82 of file sitkLabelMapContourOverlayImageFilter.h.
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Set the values of the DilationRadius vector all to value
Definition at line 85 of file sitkLabelMapContourOverlayImageFilter.h.
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Set/Get the opacity of the colored label image. The value must be between 0 and 1
Definition at line 72 of file sitkLabelMapContourOverlayImageFilter.h.
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Set/Get the object priority - HIGH_LABEL_ON_TOP by default.
Definition at line 132 of file sitkLabelMapContourOverlayImageFilter.h.
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Set/Get the slice dimension - defaults to image dimension - 1.
Definition at line 106 of file sitkLabelMapContourOverlayImageFilter.h.
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Print ourselves out
Reimplemented from itk::simple::ProcessObject.
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Definition at line 165 of file sitkLabelMapContourOverlayImageFilter.h.
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Definition at line 179 of file sitkLabelMapContourOverlayImageFilter.h.
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Definition at line 175 of file sitkLabelMapContourOverlayImageFilter.h.
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Definition at line 177 of file sitkLabelMapContourOverlayImageFilter.h.
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Definition at line 174 of file sitkLabelMapContourOverlayImageFilter.h.
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Definition at line 169 of file sitkLabelMapContourOverlayImageFilter.h.
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Definition at line 173 of file sitkLabelMapContourOverlayImageFilter.h.
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Definition at line 178 of file sitkLabelMapContourOverlayImageFilter.h.
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Definition at line 176 of file sitkLabelMapContourOverlayImageFilter.h.