sitkMultiLabelSTAPLEImageFilter.h

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/*=========================================================================
*
*  Copyright Insight Software Consortium
*
*  Licensed under the Apache License, Version 2.0 (the "License");
*  you may not use this file except in compliance with the License.
*  You may obtain a copy of the License at
*
*         http://www.apache.org/licenses/LICENSE-2.0.txt
*
*  Unless required by applicable law or agreed to in writing, software
*  distributed under the License is distributed on an "AS IS" BASIS,
*  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
*  See the License for the specific language governing permissions and
*  limitations under the License.
*
*=========================================================================*/
#ifndef sitkMultiLabelSTAPLEImageFilter_h
#define sitkMultiLabelSTAPLEImageFilter_h

/*
 * WARNING: DO NOT EDIT THIS FILE!
 * THIS FILE IS AUTOMATICALLY GENERATED BY THE SIMPLEITK BUILD PROCESS.
 * Please look at sitkMultiInputImageFilterTemplate.h.in to make changes.
 */

#include <memory>

#include "sitkBasicFilters.h"
#include "sitkImageFilter.h"

namespace itk {
  namespace simple {

    class SITKBasicFilters_EXPORT MultiLabelSTAPLEImageFilter
      : public ImageFilter<3>
    {
    public:
      typedef MultiLabelSTAPLEImageFilter Self;

      MultiLabelSTAPLEImageFilter();

      ~MultiLabelSTAPLEImageFilter();

      typedef UnsignedIntegerPixelIDTypeList  PixelIDTypeList;




      SITK_RETURN_SELF_TYPE_HEADER SetLabelForUndecidedPixels ( uint64_t LabelForUndecidedPixels ) { this->m_LabelForUndecidedPixels = LabelForUndecidedPixels; return *this; }

        uint64_t GetLabelForUndecidedPixels() const { return this->m_LabelForUndecidedPixels; }

      SITK_RETURN_SELF_TYPE_HEADER SetTerminationUpdateThreshold ( float TerminationUpdateThreshold ) { this->m_TerminationUpdateThreshold = TerminationUpdateThreshold; return *this; }

        float GetTerminationUpdateThreshold() const { return this->m_TerminationUpdateThreshold; }

      SITK_RETURN_SELF_TYPE_HEADER SetMaximumNumberOfIterations ( unsigned int MaximumNumberOfIterations ) { this->m_MaximumNumberOfIterations = MaximumNumberOfIterations; return *this; }

        unsigned int GetMaximumNumberOfIterations() const { return this->m_MaximumNumberOfIterations; }

      SITK_RETURN_SELF_TYPE_HEADER SetPriorProbabilities ( std::vector<float> PriorProbabilities ) { this->m_PriorProbabilities = PriorProbabilities; return *this; }

        std::vector<float> GetPriorProbabilities() const { return this->m_PriorProbabilities; }
     std::vector<float> GetConfusionMatrix(unsigned int input) const { return this->m_pfGetConfusionMatrix(input); };

      std::string GetName() const { return std::string ("MultiLabelSTAPLEImageFilter"); }

      std::string ToString() const;

      Image Execute ( const std::vector<Image> &images);
      Image Execute ( const Image& image1 );
      Image Execute ( const Image& image1, const Image& image2 );
      Image Execute ( const Image& image1, const Image& image2, const Image& image3 );
      Image Execute ( const Image& image1, const Image& image2, const Image& image3, const Image& image4 );
      Image Execute ( const Image& image1, const Image& image2, const Image& image3, const Image& image4, const Image& image5 );



      Image Execute ( const std::vector<Image> &images, uint64_t labelForUndecidedPixels, float terminationUpdateThreshold, unsigned int maximumNumberOfIterations, std::vector<float> priorProbabilities );
      Image Execute ( const Image& image1, uint64_t labelForUndecidedPixels, float terminationUpdateThreshold, unsigned int maximumNumberOfIterations, std::vector<float> priorProbabilities );
      Image Execute ( const Image& image1, const Image& image2, uint64_t labelForUndecidedPixels, float terminationUpdateThreshold, unsigned int maximumNumberOfIterations, std::vector<float> priorProbabilities );
      Image Execute ( const Image& image1, const Image& image2, const Image& image3, uint64_t labelForUndecidedPixels, float terminationUpdateThreshold, unsigned int maximumNumberOfIterations, std::vector<float> priorProbabilities );
      Image Execute ( const Image& image1, const Image& image2, const Image& image3, const Image& image4, uint64_t labelForUndecidedPixels, float terminationUpdateThreshold, unsigned int maximumNumberOfIterations, std::vector<float> priorProbabilities );
      Image Execute ( const Image& image1, const Image& image2, const Image& image3, const Image& image4, const Image& image5, uint64_t labelForUndecidedPixels, float terminationUpdateThreshold, unsigned int maximumNumberOfIterations, std::vector<float> priorProbabilities );




    private:

      typedef Image (Self::*MemberFunctionType)( const std::vector<Image> & );
      template <class TImageType> Image ExecuteInternal ( const std::vector<Image> &images );



      friend struct detail::MemberFunctionAddressor<MemberFunctionType>;

      nsstd::auto_ptr<detail::MemberFunctionFactory<MemberFunctionType> > m_MemberFactory;


      uint64_t  m_LabelForUndecidedPixels;
      float  m_TerminationUpdateThreshold;
      unsigned int  m_MaximumNumberOfIterations;
      std::vector<float>  m_PriorProbabilities;

      nsstd::function<std::vector<float>(unsigned int)> m_pfGetConfusionMatrix;

      // Holder of process object for active measurements
      itk::ProcessObject *m_Filter;
    };


     SITKBasicFilters_EXPORT Image MultiLabelSTAPLE ( const std::vector<Image> &images , uint64_t labelForUndecidedPixels = std::numeric_limits<uint64_t>::max(), float terminationUpdateThreshold = 1e-5f, unsigned int maximumNumberOfIterations = std::numeric_limits<unsigned int>::max(), std::vector<float> priorProbabilities = std::vector<float>() );

     SITKBasicFilters_EXPORT Image MultiLabelSTAPLE ( const Image& image1, uint64_t labelForUndecidedPixels = std::numeric_limits<uint64_t>::max(), float terminationUpdateThreshold = 1e-5f, unsigned int maximumNumberOfIterations = std::numeric_limits<unsigned int>::max(), std::vector<float> priorProbabilities = std::vector<float>() );
     SITKBasicFilters_EXPORT Image MultiLabelSTAPLE ( const Image& image1, const Image& image2, uint64_t labelForUndecidedPixels = std::numeric_limits<uint64_t>::max(), float terminationUpdateThreshold = 1e-5f, unsigned int maximumNumberOfIterations = std::numeric_limits<unsigned int>::max(), std::vector<float> priorProbabilities = std::vector<float>() );
     SITKBasicFilters_EXPORT Image MultiLabelSTAPLE ( const Image& image1, const Image& image2, const Image& image3, uint64_t labelForUndecidedPixels = std::numeric_limits<uint64_t>::max(), float terminationUpdateThreshold = 1e-5f, unsigned int maximumNumberOfIterations = std::numeric_limits<unsigned int>::max(), std::vector<float> priorProbabilities = std::vector<float>() );
     SITKBasicFilters_EXPORT Image MultiLabelSTAPLE ( const Image& image1, const Image& image2, const Image& image3, const Image& image4, uint64_t labelForUndecidedPixels = std::numeric_limits<uint64_t>::max(), float terminationUpdateThreshold = 1e-5f, unsigned int maximumNumberOfIterations = std::numeric_limits<unsigned int>::max(), std::vector<float> priorProbabilities = std::vector<float>() );
     SITKBasicFilters_EXPORT Image MultiLabelSTAPLE ( const Image& image1, const Image& image2, const Image& image3, const Image& image4, const Image& image5, uint64_t labelForUndecidedPixels = std::numeric_limits<uint64_t>::max(), float terminationUpdateThreshold = 1e-5f, unsigned int maximumNumberOfIterations = std::numeric_limits<unsigned int>::max(), std::vector<float> priorProbabilities = std::vector<float>() );

}
}
#endif