binary closing by reconstruction of an image. More...

#include <sitkBinaryClosingByReconstructionImageFilter.h>

Inheritance diagram for itk::simple::BinaryClosingByReconstructionImageFilter:

Collaboration diagram for itk::simple::BinaryClosingByReconstructionImageFilter:

Detailed Description

binary closing by reconstruction of an image.

This filter removes small (i.e., smaller than the structuring element) holes in the image. It is defined as: Closing(f) = ReconstructionByErosion(Dilation(f)).

The structuring element is assumed to be composed of binary values (zero or one). Only elements of the structuring element having values > 0 are candidates for affecting the center pixel.

Author: Gaetan Lehmann. Biologie du Developpement et de la Reproduction, INRA de Jouy-en-Josas, France.

This implementation was taken from the Insight Journal paper: https://doi.org/10.54294/q6auw4

See also: MorphologyImageFilter , ClosingByReconstructionImageFilter , BinaryOpeningByReconstructionImageFilter; itk::simple::BinaryClosingByReconstruction for the procedural interface; itk::BinaryClosingByReconstructionImageFilter for the Doxygen on the original ITK class.

Definition at line 50 of file sitkBinaryClosingByReconstructionImageFilter.h.

Public Types
using	PixelIDTypeList = IntegerPixelIDTypeList

using	Self = BinaryClosingByReconstructionImageFilter

Public Types inherited from itk::simple::ImageFilter
using	Self = ImageFilter

Public Types inherited from itk::simple::ProcessObject
using	Self = ProcessObject

Public Member Functions
	BinaryClosingByReconstructionImageFilter ()

Image	Execute (const Image &image1)

Self &	FullyConnectedOff ()

Self &	FullyConnectedOn ()

double	GetForegroundValue () const

bool	GetFullyConnected () const

std::vector< unsigned int >	GetKernelRadius () const

KernelEnum	GetKernelType () const

std::string	GetName () const

Self &	SetForegroundValue (double ForegroundValue)

Self &	SetFullyConnected (bool FullyConnected)

Self &	SetKernelRadius (std::vector< unsigned int > KernelRadius)

Self &	SetKernelRadius (unsigned int value)

Self &	SetKernelType (KernelEnum KernelType)

std::string	ToString () const

virtual	~BinaryClosingByReconstructionImageFilter ()

Public Member Functions inherited from itk::simple::ImageFilter
	ImageFilter ()

virtual	~ImageFilter ()=0

Public Member Functions inherited from itk::simple::ProcessObject
virtual void	Abort ()

virtual int	AddCommand (itk::simple::EventEnum event, const std::function< void()> &func)
	Directly add a callback to observe an event. More...

virtual int	AddCommand (itk::simple::EventEnum event, itk::simple::Command &cmd)
	Add a Command Object to observer the event. More...

virtual float	GetProgress () const
	An Active Measurement of the progress of execution. More...

virtual bool	HasCommand (itk::simple::EventEnum event) const
	Query of this object has any registered commands for event. More...

	ProcessObject ()

virtual void	RemoveAllCommands ()
	Remove all registered commands. More...

virtual	~ProcessObject ()

virtual void	DebugOn ()

virtual void	DebugOff ()

virtual bool	GetDebug () const

virtual void	SetDebug (bool debugFlag)

virtual void	SetNumberOfThreads (unsigned int n)

virtual unsigned int	GetNumberOfThreads () const

virtual void	SetNumberOfWorkUnits (unsigned int n)

virtual unsigned int	GetNumberOfWorkUnits () const

Private Types
using	MemberFunctionType = Image(Self::*)(const Image &image1)

Private Member Functions
template<class TImageType >
Image	ExecuteInternal (const Image &image1)

Private Attributes
double	m_ForegroundValue {1.0}

bool	m_FullyConnected {false}

std::vector< unsigned int >	m_KernelRadius {std::vector<uint32_t>(3, 1)}

KernelEnum	m_KernelType {itk::simple::sitkBall}

std::unique_ptr< detail::MemberFunctionFactory< MemberFunctionType > >	m_MemberFactory

Friends
struct	detail::MemberFunctionAddressor< MemberFunctionType >

Additional Inherited Members
Static Public Member Functions inherited from itk::simple::ProcessObject
static bool	GetGlobalDefaultDebug ()

static void	GlobalDefaultDebugOff ()

static void	GlobalDefaultDebugOn ()

static void	SetGlobalDefaultDebug (bool debugFlag)

static void	GlobalWarningDisplayOn ()

static void	GlobalWarningDisplayOff ()

static void	SetGlobalWarningDisplay (bool flag)

static bool	GetGlobalWarningDisplay ()

static double	GetGlobalDefaultCoordinateTolerance ()
	Access the global tolerance to determine congruent spaces. More...

static void	SetGlobalDefaultCoordinateTolerance (double)
	Access the global tolerance to determine congruent spaces. More...

static double	GetGlobalDefaultDirectionTolerance ()
	Access the global tolerance to determine congruent spaces. More...

static void	SetGlobalDefaultDirectionTolerance (double)
	Access the global tolerance to determine congruent spaces. More...

static bool	SetGlobalDefaultThreader (const std::string &threader)
	Set/Get the default threader used for process objects. More...

static std::string	GetGlobalDefaultThreader ()
	Set/Get the default threader used for process objects. More...

static void	SetGlobalDefaultNumberOfThreads (unsigned int n)

static unsigned int	GetGlobalDefaultNumberOfThreads ()
	Set/Get the default threader used for process objects. More...

Protected Member Functions inherited from itk::simple::ImageFilter
void	CheckImageMatchingDimension (const Image &image1, const Image &image2, const std::string &image2Name)

void	CheckImageMatchingPixelType (const Image &image1, const Image &image2, const std::string &image2Name)

void	CheckImageMatchingSize (const Image &image1, const Image &image2, const std::string &image2Name)

Protected Member Functions inherited from itk::simple::ProcessObject
virtual unsigned long	AddITKObserver (const itk::EventObject &, itk::Command *)

virtual itk::ProcessObject *	GetActiveProcess ()

virtual void	OnActiveProcessDelete ()

virtual void	onCommandDelete (const itk::simple::Command *cmd) noexcept

virtual void	PreUpdate (itk::ProcessObject *p)

virtual void	RemoveITKObserver (EventCommand &e)

Protected Member Functions inherited from itk::simple::NonCopyable
	NonCopyable ()=default

	NonCopyable (const NonCopyable &)=delete

NonCopyable &	operator= (const NonCopyable &)=delete

Static Protected Member Functions inherited from itk::simple::ImageFilter
template<class TImageType >
static void	FixNonZeroIndex (TImageType *img)

Static Protected Member Functions inherited from itk::simple::ProcessObject
template<class TImageType >
static TImageType::ConstPointer	CastImageToITK (const Image &img)

template<class TPixelType , unsigned int VImageDimension, unsigned int VLength, template< typename, unsigned int > class TVector>
static Image	CastITKToImage (itk::Image< TVector< TPixelType, VLength >, VImageDimension > *img)

template<unsigned int VImageDimension, unsigned int VLength, template< unsigned int > class TVector>
static Image	CastITKToImage (itk::Image< TVector< VLength >, VImageDimension > *img)

template<class TImageType >
static Image	CastITKToImage (TImageType *img)

static const itk::EventObject &	GetITKEventObject (EventEnum e)

template<typename T >
static std::ostream &	ToStringHelper (std::ostream &os, const T &v)

static std::ostream &	ToStringHelper (std::ostream &os, const char &v)

static std::ostream &	ToStringHelper (std::ostream &os, const signed char &v)

static std::ostream &	ToStringHelper (std::ostream &os, const unsigned char &v)

Member Typedef Documentation

◆ MemberFunctionType

using itk::simple::BinaryClosingByReconstructionImageFilter::MemberFunctionType = Image (Self::*)( const Image& image1 )

private

Setup for member function dispatching

Definition at line 127 of file sitkBinaryClosingByReconstructionImageFilter.h.

◆ PixelIDTypeList

using itk::simple::BinaryClosingByReconstructionImageFilter::PixelIDTypeList = IntegerPixelIDTypeList

Define the pixels types supported by this filter

Definition at line 62 of file sitkBinaryClosingByReconstructionImageFilter.h.

◆ Self

using itk::simple::BinaryClosingByReconstructionImageFilter::Self = BinaryClosingByReconstructionImageFilter

Definition at line 52 of file sitkBinaryClosingByReconstructionImageFilter.h.

Constructor & Destructor Documentation

◆ ~BinaryClosingByReconstructionImageFilter()

virtual itk::simple::BinaryClosingByReconstructionImageFilter::~BinaryClosingByReconstructionImageFilter ( )

virtual

Destructor

◆ BinaryClosingByReconstructionImageFilter()

itk::simple::BinaryClosingByReconstructionImageFilter::BinaryClosingByReconstructionImageFilter ( )

Default Constructor that takes no arguments and initializes default parameters

Member Function Documentation

◆ Execute()

Image itk::simple::BinaryClosingByReconstructionImageFilter::Execute ( const Image & image1 )

Execute the filter on the input image

◆ ExecuteInternal()

template<class TImageType >

Image itk::simple::BinaryClosingByReconstructionImageFilter::ExecuteInternal ( const Image & image1 )

private

◆ FullyConnectedOff()

Self& itk::simple::BinaryClosingByReconstructionImageFilter::FullyConnectedOff ( )

inline

Definition at line 105 of file sitkBinaryClosingByReconstructionImageFilter.h.

◆ FullyConnectedOn()

Self& itk::simple::BinaryClosingByReconstructionImageFilter::FullyConnectedOn ( )

inline

Set the value of FullyConnected to true or false respectfully.

Definition at line 104 of file sitkBinaryClosingByReconstructionImageFilter.h.

◆ GetForegroundValue()

double itk::simple::BinaryClosingByReconstructionImageFilter::GetForegroundValue ( ) const

inline

Get the value in the image considered as "foreground". Defaults to maximum value of InputPixelType.

Definition at line 96 of file sitkBinaryClosingByReconstructionImageFilter.h.

◆ GetFullyConnected()

bool itk::simple::BinaryClosingByReconstructionImageFilter::GetFullyConnected ( ) const

inline

Set/Get whether the connected components are defined strictly by face connectivity or by face+edge+vertex connectivity. Default is FullyConnectedOff. For objects that are 1 pixel wide, use FullyConnectedOn.

Definition at line 110 of file sitkBinaryClosingByReconstructionImageFilter.h.

◆ GetKernelRadius()

std::vector<unsigned int> itk::simple::BinaryClosingByReconstructionImageFilter::GetKernelRadius ( ) const

inline

Get the radius of the kernel structuring element.

Definition at line 76 of file sitkBinaryClosingByReconstructionImageFilter.h.

◆ GetKernelType()

KernelEnum itk::simple::BinaryClosingByReconstructionImageFilter::GetKernelType ( ) const

inline

Get the kernel or structuring element used for the morphology.

Definition at line 86 of file sitkBinaryClosingByReconstructionImageFilter.h.

◆ GetName()

std::string itk::simple::BinaryClosingByReconstructionImageFilter::GetName ( ) const

inlinevirtual

Name of this class

Implements itk::simple::ProcessObject.

Definition at line 113 of file sitkBinaryClosingByReconstructionImageFilter.h.

◆ SetForegroundValue()

Self& itk::simple::BinaryClosingByReconstructionImageFilter::SetForegroundValue ( double ForegroundValue )

inline

Set the value in the image to consider as "foreground". Defaults to maximum value of InputPixelType.

Definition at line 91 of file sitkBinaryClosingByReconstructionImageFilter.h.

◆ SetFullyConnected()

Self& itk::simple::BinaryClosingByReconstructionImageFilter::SetFullyConnected ( bool FullyConnected )

inline

Set/Get whether the connected components are defined strictly by face connectivity or by face+edge+vertex connectivity. Default is FullyConnectedOff. For objects that are 1 pixel wide, use FullyConnectedOn.

Definition at line 101 of file sitkBinaryClosingByReconstructionImageFilter.h.