The class that wraps the elastix registration library. More...

#include <sitkElastixImageFilter.h>

Collaboration diagram for itk::simple::ElastixImageFilter:

Detailed Description

The class that wraps the elastix registration library.

Examples: Elastix/elx.cxx.

Definition at line 36 of file sitkElastixImageFilter.h.

Public Types
typedef Image(Self::*	MemberFunctionType) (void)

typedef ElastixImageFilter::ParameterKeyType	ParameterKeyType

typedef std::string	ParameterKeyType

typedef ElastixImageFilter::ParameterMapConstIterator	ParameterMapConstIterator

typedef ParameterMapType::const_iterator	ParameterMapConstIterator

typedef ElastixImageFilter::ParameterMapIterator	ParameterMapIterator

typedef ParameterMapType::iterator	ParameterMapIterator

typedef ElastixImageFilter::ParameterMapType	ParameterMapType

typedef std::map< ParameterKeyType, ParameterValueVectorType >	ParameterMapType

typedef ElastixImageFilter::ParameterMapVectorType	ParameterMapVectorType

typedef std::vector< ParameterMapType >	ParameterMapVectorType

typedef elastix::ParameterObject::Pointer	ParameterObjectPointer

typedef elastix::ParameterObject	ParameterObjectType

typedef ElastixImageFilter::ParameterValueType	ParameterValueType

typedef std::string	ParameterValueType

typedef ElastixImageFilter::ParameterValueVectorIterator	ParameterValueVectorIterator

typedef ParameterValueVectorType::iterator	ParameterValueVectorIterator

typedef ElastixImageFilter::ParameterValueVectorType	ParameterValueVectorType

typedef std::vector< ParameterValueType >	ParameterValueVectorType

typedef ElastixImageFilterImpl	Self

typedef ElastixImageFilter	Self

typedef ElastixImageFilter::VectorOfImage	VectorOfImage

typedef std::vector< Image >	VectorOfImage

Public Member Functions
void	AddFixedImage (const Image &fixedImage)

Self &	AddFixedImage (const Image &fixedImage)
	Adds an image to the end of the container of fixed images. More...

void	AddFixedMask (const Image &fixedMask)

Self &	AddFixedMask (const Image &fixedMask)
	Adds an image to the end of the container of fixed masks. More...

void	AddMovingImage (const Image &movingImage)

Self &	AddMovingImage (const Image &movingImage)
	Adds an image to the end of the container of moving images. More...

void	AddMovingMask (const Image &movingMask)

Self &	AddMovingMask (const Image &movingMask)
	Adds an image to the end of the container of moving masks. More...

void	AddParameter (const std::string key, const std::string value)

Self &	AddParameter (const std::string key, const std::string value)
	Adds a parameter specified by `key`, with the specified value to all parameter maps. More...

void	AddParameter (const std::string key, const std::vector< std::string > value)

Self &	AddParameter (const std::string key, const std::vector< std::string > value)
	Adds a parameter specified by `key`, with the specified values to all parameter maps. More...

void	AddParameter (const unsigned int index, const std::string key, const std::string value)

Self &	AddParameter (const unsigned int index, const std::string key, const std::string value)
	Adds a parameter specified by `key`, with the specified value to the parameter map at the specified (zero-based) `index`. More...

void	AddParameter (const unsigned int index, const std::string key, const std::vector< std::string > value)

Self &	AddParameter (const unsigned int index, const std::string key, const std::vector< std::string > value)
	Adds a parameter specified by `key`, with the specified values to the parameter map at the specified (zero-based) `index`. More...

void	AddParameterMap (const std::map< std::string, std::vector< std::string >> parameterMap)

Self &	AddParameterMap (const std::map< std::string, std::vector< std::string >> parameterMap)
	Adds a parameter map to the container of parameter maps. More...

template<class TFixedImage , class TMovingImage >
Image	DualExecuteInternal (void)

	ElastixImageFilter ()
	Default-constructor. More...

	ElastixImageFilterImpl (void)

Image	Execute ()
	Executes the registration, and returns the result image. More...

Image	Execute (void)

std::map< std::string, std::vector< std::string > >	GetDefaultParameterMap (const std::string transformName, const unsigned int numberOfResolutions=4, const double finalGridSpacingInPhysicalUnits=10.0)

std::map< std::string, std::vector< std::string > >	GetDefaultParameterMap (const std::string transformName, const unsigned int numberOfResolutions=4, const double finalGridSpacingInPhysicalUnits=10.0)
	Returns the default parameter map for the specified function arguments (`transformName` may be "translation", "rigid" , "affine", "nonrigid", or "bspline"). More...

VectorOfImage &	GetFixedImage ()
	Retrieves a reference to the container of fixed images. More...

Image &	GetFixedImage (const unsigned long index)

Image &	GetFixedImage (const unsigned long index)
	Retrieves a reference to the fixed image at the specified (zero-based) `index`. More...

VectorOfImage &	GetFixedImage (void)

VectorOfImage &	GetFixedMask ()
	Retrieves a reference to the container of fixed masks. More...

Image &	GetFixedMask (const unsigned long index)

Image &	GetFixedMask (const unsigned long index)
	Retrieves a reference to the fixed mask at the specified (zero-based) `index`. More...

VectorOfImage &	GetFixedMask (void)

std::string	GetFixedPointSetFileName ()
	Returns the name of the current point set file of points from the fixed image. More...

std::string	GetFixedPointSetFileName (void)

std::string	GetInitialTransformParameterFileName ()
	Returns the initial transform parameter file name. More...

std::string	GetInitialTransformParameterFileName (void)

std::string	GetLogFileName ()
	Returns the name of the current log file. More...

std::string	GetLogFileName (void)

bool	GetLogToConsole ()
	Returns whether logging to console is switched on. More...

bool	GetLogToConsole (void)

bool	GetLogToFile ()
	Returns whether logging to file is switched on. More...

bool	GetLogToFile (void)

VectorOfImage &	GetMovingImage ()
	Retrieves a reference to the moving image at the specified (zero-based) `index`. More...

Image &	GetMovingImage (const unsigned long index)

Image &	GetMovingImage (const unsigned long index)
	Retrieves a reference to the moving image at the specified (zero-based) `index`. More...

VectorOfImage &	GetMovingImage (void)

VectorOfImage &	GetMovingMask ()
	Retrieves a reference to the container of moving masks. More...

Image &	GetMovingMask (const unsigned long index)

Image &	GetMovingMask (const unsigned long index)
	Retrieves a reference to the moving mask at the specified (zero-based) `index`. More...

VectorOfImage &	GetMovingMask (void)

std::string	GetMovingPointSetFileName ()
	Returns the name of the current point set file of points from the moving image. More...

std::string	GetMovingPointSetFileName (void)

std::string	GetName () const

std::string	GetName (void) const

unsigned int	GetNumberOfFixedImages ()

unsigned int	GetNumberOfFixedImages ()
	Returns the number of fixed images. More...

unsigned int	GetNumberOfFixedMasks ()

unsigned int	GetNumberOfFixedMasks ()
	Returns the number of fixed masks. More...

unsigned int	GetNumberOfMovingImages ()

unsigned int	GetNumberOfMovingImages ()
	Returns the number of moving images. More...

unsigned int	GetNumberOfMovingMasks ()

unsigned int	GetNumberOfMovingMasks ()
	Returns the number of moving masks. More...

unsigned int	GetNumberOfParameterMaps ()
	Returns the number of parameter maps. More...

unsigned int	GetNumberOfParameterMaps (void)

int	GetNumberOfThreads ()
	Returns the current maximum number of threads. More...

int	GetNumberOfThreads (void)

std::string	GetOutputDirectory ()
	Returns the current output directory. More...

std::string	GetOutputDirectory (void)

std::vector< std::string >	GetParameter (const std::string key)

std::vector< std::string >	GetParameter (const std::string key)
	Retrieves the values of the parameter specified by `key`, when there is only one parameter map. More...

std::vector< std::string >	GetParameter (const unsigned int index, const std::string key)

std::vector< std::string >	GetParameter (const unsigned int index, const std::string key)
	Retrieves the values of the parameter specified by `key`, from the parameter map at the specified (zero-based) `index`. More...

std::vector< std::map< std::string, std::vector< std::string > > >	GetParameterMap ()
	Returns a copy of the parameter maps. More...

std::vector< std::map< std::string, std::vector< std::string > > >	GetParameterMap (void)

std::vector< std::map< std::string, std::vector< std::string > > >	GetParameterMaps ()

Image	GetResultImage ()
	Returns the result image. More...

Image	GetResultImage (void)

std::vector< std::map< std::string, std::vector< std::string > > >	GetTransformParameterMap ()
	Returns all transform parameter maps. More...

std::map< std::string, std::vector< std::string > >	GetTransformParameterMap (const unsigned int index)

std::map< std::string, std::vector< std::string > >	GetTransformParameterMap (const unsigned int index)
	Returns the transform parameter map at the specified (zero-based) `index`. More...

std::vector< std::map< std::string, std::vector< std::string > > >	GetTransformParameterMap (void)

bool	IsEmpty (const Image &image)

void	LogToConsoleOff ()

Self &	LogToConsoleOff ()
	Switches logging to console off. More...

void	LogToConsoleOn ()

Self &	LogToConsoleOn ()
	Switches logging to console on. More...

Self &	LogToFileOff ()
	Switches logging to file off. More...

void	LogToFileOff (void)

Self &	LogToFileOn ()
	Switches logging to file on. More...

void	LogToFileOn (void)

Self &	PrintParameterMap ()
	Prints all parameter maps to standard output. More...

void	PrintParameterMap (const ParameterMapType parameterMapVector)

Self &	PrintParameterMap (const ParameterMapType parameterMapVector)
	Prints the specified parameter map to standard output. More...

void	PrintParameterMap (const ParameterMapVectorType parameterMapVector)

Self &	PrintParameterMap (const ParameterMapVectorType parameterMapVector)
	Prints the specified parameter maps to standard output. More...

void	PrintParameterMap (void)

std::map< std::string, std::vector< std::string > >	ReadParameterFile (const std::string filename)

std::map< std::string, std::vector< std::string > >	ReadParameterFile (const std::string filename)
	Reads the parameter file specified by `filename`, and returns its content as a parameter map. More...

Self &	RemoveFixedImage ()
	Removes all fixed images. More...

void	RemoveFixedImage (const unsigned long index)

Self &	RemoveFixedImage (const unsigned long index)
	Removes an image at the specified (zero-based) `index` from the container of fixed images. More...

void	RemoveFixedImage (void)

Self &	RemoveFixedMask ()
	Removes all fixed masks. More...

void	RemoveFixedMask (const unsigned long index)

Self &	RemoveFixedMask (const unsigned long index)
	Removes an image at the specified (zero-based) `index` from the container of fixed masks. More...

void	RemoveFixedMask (void)

Self &	RemoveFixedPointSetFileName ()
	Clears the current point set file name of points from the fixed image. More...

void	RemoveFixedPointSetFileName (void)

Self &	RemoveInitialTransformParameterFileName ()
	Clears the initial transform parameter file name. More...

void	RemoveInitialTransformParameterFileName (void)

Self &	RemoveLogFileName ()
	Clears the name of the current log file. More...

void	RemoveLogFileName (void)

Self &	RemoveMovingImage ()
	Removes all moving images. More...

void	RemoveMovingImage (const unsigned long index)

Self &	RemoveMovingImage (const unsigned long index)
	Removes an image at the specified (zero-based) `index` from the container of moving images. More...

void	RemoveMovingImage (void)

Self &	RemoveMovingMask ()
	Removes all moving masks. More...

void	RemoveMovingMask (const unsigned long index)

Self &	RemoveMovingMask (const unsigned long index)
	Removes an image at the specified (zero-based) `index` from the container of moving masks. More...

void	RemoveMovingMask (void)

Self &	RemoveMovingPointSetFileName ()
	Clears the current point set file name of points from the moving image. More...

void	RemoveMovingPointSetFileName (void)

Self &	RemoveOutputDirectory ()
	Clears the name of the current output directory. (Does not remove the actual directory.) More...

void	RemoveOutputDirectory (void)

void	RemoveParameter (const std::string key)

Self &	RemoveParameter (const std::string key)
	Removes the parameter specified by `key` from all parameter maps. More...

void	RemoveParameter (const unsigned int index, const std::string key)

Self &	RemoveParameter (const unsigned int index, const std::string key)
	Removes the parameter specified by `key` from the parameter map at the specified (zero-based) `index`. More...

void	SetFixedImage (const Image &fixedImage)

Self &	SetFixedImage (const Image &fixedImage)
	Sets a fixed image. Stores the image into the container of fixed images. More...

void	SetFixedImage (const VectorOfImage &fixedImages)

Self &	SetFixedImage (const VectorOfImage &fixedImages)
	Sets multiple fixed images. Stores the images into the container of fixed images. More...

void	SetFixedMask (const Image &fixedMask)

Self &	SetFixedMask (const Image &fixedMask)
	Sets a fixed mask. Stores the image into the container of fixed masks. More...

void	SetFixedMask (const VectorOfImage &fixedMasks)

Self &	SetFixedMask (const VectorOfImage &fixedMasks)
	Sets multiple fixed masks. Stores the images into the container of fixed masks. More...

Self &	SetFixedPointSetFileName (const std::string fixedPointSetFileName)
	Specifies a set of points from the fixed image by a point set file, `fixedPointSetFileName`. More...

void	SetFixedPointSetFileName (const std::string movingPointSetFileName)

void	SetInitialTransformParameterFileName (const std::string initialTransformParmaterFileName)

Self &	SetInitialTransformParameterFileName (const std::string initialTransformParmaterFileName)
	Specifies the initial transformation by the specified transform parameter file name. More...

void	SetLogFileName (const std::string logFileName)

Self &	SetLogFileName (const std::string logFileName)
	Sets the name of the current log file. More...

void	SetLogToConsole (bool)

Self &	SetLogToConsole (bool)
	Switches logging to console on (`true`) or off (`false`), as specified by its function argument. More...

void	SetLogToFile (const bool logToFile)

Self &	SetLogToFile (const bool logToFile)
	Switches logging to file on (`true`) or off (`false`), as specified by its function argument. More...

void	SetMovingImage (const Image &movingImages)

Self &	SetMovingImage (const Image &movingImages)
	Sets a moving image. Stores the image into the container of moving images. More...

void	SetMovingImage (const VectorOfImage &movingImage)

Self &	SetMovingImage (const VectorOfImage &movingImage)
	Sets multiple moving images. Stores the images into the container of moving images. More...

void	SetMovingMask (const Image &movingMask)

Self &	SetMovingMask (const Image &movingMask)
	Sets a moving mask. Stores the image into the container of moving masks. More...

void	SetMovingMask (const VectorOfImage &movingMasks)

Self &	SetMovingMask (const VectorOfImage &movingMasks)
	Sets multiple moving masks. Stores the images into the container of moving masks. More...

void	SetMovingPointSetFileName (const std::string movingPointSetFileName)

Self &	SetMovingPointSetFileName (const std::string movingPointSetFileName)
	Specifies a set of points from the moving image by a point set file, `movingPointSetFileName`. More...

void	SetNumberOfThreads (int n)

Self &	SetNumberOfThreads (int n)
	Sets the maximum number of threads to the specified number `n`. More...

void	SetOutputDirectory (const std::string outputDirectory)

Self &	SetOutputDirectory (const std::string outputDirectory)
	Sets the output directory. More...

void	SetParameter (const std::string key, const std::string value)

Self &	SetParameter (const std::string key, const std::string value)
	Sets the value of the parameter specified by `key`, in all parameter maps. More...

void	SetParameter (const std::string key, const std::vector< std::string > value)

Self &	SetParameter (const std::string key, const std::vector< std::string > value)
	Sets the values of the parameter specified by `key`, in all parameter maps. More...

void	SetParameter (const unsigned int index, const std::string key, const std::string value)

Self &	SetParameter (const unsigned int index, const std::string key, const std::string value)
	Sets the value of the parameter specified by `key`, in the parameter map at the specified (zero-based) `index`. More...

void	SetParameter (const unsigned int index, const std::string key, const std::vector< std::string > value)

Self &	SetParameter (const unsigned int index, const std::string key, const std::vector< std::string > value)
	Sets the values of the parameter specified by `key`, in the parameter map at the specified (zero-based) `index`. More...

void	SetParameterMap (const std::map< std::string, std::vector< std::string >> parameterMap)

Self &	SetParameterMap (const std::map< std::string, std::vector< std::string >> parameterMap)
	Specifies a single parameter map. More...

void	SetParameterMap (const std::string transformName, const unsigned int numberOfResolutions=4u, const double finalGridSpacingInPhysicalUnits=10.0)

Self &	SetParameterMap (const std::string transformName, const unsigned int numberOfResolutions=4u, const double finalGridSpacingInPhysicalUnits=10.0)
	Specifies the parameter map by a `transformName` ("translation", "rigid" , "affine", "nonrigid", or "bspline"), and optionally `numberOfResolutions` and `finalGridSpacingInPhysicalUnits`. More...

void	SetParameterMap (const std::vector< std::map< std::string, std::vector< std::string >>> parameterMapVector)

Self &	SetParameterMap (const std::vector< std::map< std::string, std::vector< std::string >>> parameterMapVector)
	Specifies multiple parameter maps. More...

Self &	SetParameterMaps (const std::vector< std::map< std::string, std::vector< std::string >>> parameterMapVector)

void	WriteParameterFile (const std::map< std::string, std::vector< std::string >> parameterMap, const std::string filename)

Self &	WriteParameterFile (const std::map< std::string, std::vector< std::string >> parameterMap, const std::string filename)
	Writes a parameter map to the file, specified by `filename`. More...

	~ElastixImageFilter ()
	Destructor. More...

	~ElastixImageFilterImpl (void)

Public Attributes
std::unique_ptr< detail::DualMemberFunctionFactory< MemberFunctionType > >	m_DualMemberFactory

VectorOfImage	m_FixedImages

VectorOfImage	m_FixedMasks

std::string	m_FixedPointSetFileName

std::string	m_InitialTransformParameterMapFileName

std::string	m_LogFileName

bool	m_LogToConsole

bool	m_LogToFile

VectorOfImage	m_MovingImages

VectorOfImage	m_MovingMasks

std::string	m_MovingPointSetFileName

int	m_NumberOfThreads

std::string	m_OutputDirectory

ParameterMapVectorType	m_ParameterMapVector

Image	m_ResultImage

ParameterMapVectorType	m_TransformParameterMapVector

Private Attributes
const std::unique_ptr< ElastixImageFilterImpl >	m_Pimple

Friends
struct	detail::DualExecuteInternalAddressor< MemberFunctionType >

Member Typedef Documentation

◆ MemberFunctionType

typedef Image(Self::* itk::simple::ElastixImageFilter::MemberFunctionType) (void)

Definition at line 236 of file sitkElastixImageFilterImpl.h.

◆ ParameterKeyType [1/2]

typedef ElastixImageFilter::ParameterKeyType itk::simple::ElastixImageFilter::ParameterKeyType

Definition at line 26 of file sitkElastixImageFilterImpl.h.

◆ ParameterKeyType [2/2]

typedef std::string itk::simple::ElastixImageFilter::ParameterKeyType

Definition at line 49 of file sitkElastixImageFilter.h.

◆ ParameterMapConstIterator [1/2]

typedef ElastixImageFilter::ParameterMapConstIterator itk::simple::ElastixImageFilter::ParameterMapConstIterator

Definition at line 33 of file sitkElastixImageFilterImpl.h.

◆ ParameterMapConstIterator [2/2]

typedef ParameterMapType::const_iterator itk::simple::ElastixImageFilter::ParameterMapConstIterator

Definition at line 56 of file sitkElastixImageFilter.h.

◆ ParameterMapIterator [1/2]

typedef ElastixImageFilter::ParameterMapIterator itk::simple::ElastixImageFilter::ParameterMapIterator

Definition at line 32 of file sitkElastixImageFilterImpl.h.

◆ ParameterMapIterator [2/2]

typedef ParameterMapType::iterator itk::simple::ElastixImageFilter::ParameterMapIterator

Definition at line 55 of file sitkElastixImageFilter.h.

◆ ParameterMapType [1/2]

typedef ElastixImageFilter::ParameterMapType itk::simple::ElastixImageFilter::ParameterMapType

Definition at line 30 of file sitkElastixImageFilterImpl.h.

◆ ParameterMapType [2/2]

typedef std::map<ParameterKeyType, ParameterValueVectorType> itk::simple::ElastixImageFilter::ParameterMapType

Definition at line 53 of file sitkElastixImageFilter.h.

◆ ParameterMapVectorType [1/2]

typedef ElastixImageFilter::ParameterMapVectorType itk::simple::ElastixImageFilter::ParameterMapVectorType

Definition at line 31 of file sitkElastixImageFilterImpl.h.

◆ ParameterMapVectorType [2/2]

typedef std::vector<ParameterMapType> itk::simple::ElastixImageFilter::ParameterMapVectorType

Definition at line 54 of file sitkElastixImageFilter.h.

◆ ParameterObjectPointer

typedef elastix::ParameterObject::Pointer itk::simple::ElastixImageFilter::ParameterObjectPointer

Definition at line 36 of file sitkElastixImageFilterImpl.h.

◆ ParameterObjectType

typedef elastix::ParameterObject itk::simple::ElastixImageFilter::ParameterObjectType

Definition at line 35 of file sitkElastixImageFilterImpl.h.

◆ ParameterValueType [1/2]

typedef ElastixImageFilter::ParameterValueType itk::simple::ElastixImageFilter::ParameterValueType

Definition at line 27 of file sitkElastixImageFilterImpl.h.

◆ ParameterValueType [2/2]

typedef std::string itk::simple::ElastixImageFilter::ParameterValueType

Definition at line 50 of file sitkElastixImageFilter.h.

◆ ParameterValueVectorIterator [1/2]

typedef ElastixImageFilter::ParameterValueVectorIterator itk::simple::ElastixImageFilter::ParameterValueVectorIterator

Definition at line 29 of file sitkElastixImageFilterImpl.h.

◆ ParameterValueVectorIterator [2/2]

typedef ParameterValueVectorType::iterator itk::simple::ElastixImageFilter::ParameterValueVectorIterator

Definition at line 52 of file sitkElastixImageFilter.h.

◆ ParameterValueVectorType [1/2]

typedef ElastixImageFilter::ParameterValueVectorType itk::simple::ElastixImageFilter::ParameterValueVectorType

Definition at line 28 of file sitkElastixImageFilterImpl.h.

◆ ParameterValueVectorType [2/2]

typedef std::vector<ParameterValueType> itk::simple::ElastixImageFilter::ParameterValueVectorType

Definition at line 51 of file sitkElastixImageFilter.h.

◆ Self [1/2]

typedef ElastixImageFilterImpl itk::simple::ElastixImageFilter::Self

Definition at line 22 of file sitkElastixImageFilterImpl.h.

◆ Self [2/2]

typedef ElastixImageFilter itk::simple::ElastixImageFilter::Self

Definition at line 45 of file sitkElastixImageFilter.h.

◆ VectorOfImage [1/2]

typedef ElastixImageFilter::VectorOfImage itk::simple::ElastixImageFilter::VectorOfImage

Definition at line 24 of file sitkElastixImageFilterImpl.h.

◆ VectorOfImage [2/2]

typedef std::vector<Image> itk::simple::ElastixImageFilter::VectorOfImage

Definition at line 47 of file sitkElastixImageFilter.h.

Constructor & Destructor Documentation

◆ ElastixImageFilter()

itk::simple::ElastixImageFilter::ElastixImageFilter ( )

Default-constructor.

◆ ~ElastixImageFilter()

itk::simple::ElastixImageFilter::~ElastixImageFilter ( )

Destructor.

◆ ~ElastixImageFilterImpl()

itk::simple::ElastixImageFilter::~ElastixImageFilterImpl ( void )

Member Function Documentation

◆ AddFixedImage() [1/2]

void itk::simple::ElastixImageFilter::AddFixedImage ( const Image & fixedImage )

◆ AddFixedImage() [2/2]

Self& itk::simple::ElastixImageFilter::AddFixedImage ( const Image & fixedImage )

Adds an image to the end of the container of fixed images.

◆ AddFixedMask() [1/2]

void itk::simple::ElastixImageFilter::AddFixedMask ( const Image & fixedMask )

◆ AddFixedMask() [2/2]

Self& itk::simple::ElastixImageFilter::AddFixedMask ( const Image & fixedMask )

Adds an image to the end of the container of fixed masks.

◆ AddMovingImage() [1/2]

void itk::simple::ElastixImageFilter::AddMovingImage ( const Image & movingImage )

◆ AddMovingImage() [2/2]

Self& itk::simple::ElastixImageFilter::AddMovingImage ( const Image & movingImage )

Adds an image to the end of the container of moving images.

◆ AddMovingMask() [1/2]

void itk::simple::ElastixImageFilter::AddMovingMask ( const Image & movingMask )

◆ AddMovingMask() [2/2]

Self& itk::simple::ElastixImageFilter::AddMovingMask ( const Image & movingMask )

Adds an image to the end of the container of moving masks.

◆ AddParameter() [1/8]

void itk::simple::ElastixImageFilter::AddParameter	(	const std::string	key,
		const std::string	value
	)

◆ AddParameter() [2/8]

Self& itk::simple::ElastixImageFilter::AddParameter	(	const std::string	key,
		const std::string	value
	)

Adds a parameter specified by key, with the specified value to all parameter maps.

◆ AddParameter() [3/8]

void itk::simple::ElastixImageFilter::AddParameter	(	const std::string	key,
		const std::vector< std::string >	value
	)

◆ AddParameter() [4/8]

Self& itk::simple::ElastixImageFilter::AddParameter	(	const std::string	key,
		const std::vector< std::string >	value
	)

Adds a parameter specified by key, with the specified values to all parameter maps.

◆ AddParameter() [5/8]

void itk::simple::ElastixImageFilter::AddParameter	(	const unsigned int	index,
		const std::string	key,
		const std::string	value
	)

◆ AddParameter() [6/8]

Self& itk::simple::ElastixImageFilter::AddParameter	(	const unsigned int	index,
		const std::string	key,
		const std::string	value
	)

Adds a parameter specified by key, with the specified value to the parameter map at the specified (zero-based) index.

◆ AddParameter() [7/8]

void itk::simple::ElastixImageFilter::AddParameter	(	const unsigned int	index,
		const std::string	key,
		const std::vector< std::string >	value
	)

◆ AddParameter() [8/8]

Self& itk::simple::ElastixImageFilter::AddParameter	(	const unsigned int	index,
		const std::string	key,
		const std::vector< std::string >	value
	)

Adds a parameter specified by key, with the specified values to the parameter map at the specified (zero-based) index.

◆ AddParameterMap() [1/2]

void itk::simple::ElastixImageFilter::AddParameterMap ( const std::map< std::string, std::vector< std::string >> parameterMap )

◆ AddParameterMap() [2/2]

Self& itk::simple::ElastixImageFilter::AddParameterMap ( const std::map< std::string, std::vector< std::string >> parameterMap )

Adds a parameter map to the container of parameter maps.

◆ DualExecuteInternal()

template<class TFixedImage , class TMovingImage >

Image itk::simple::ElastixImageFilter::DualExecuteInternal ( void )

◆ ElastixImageFilterImpl()

itk::simple::ElastixImageFilter::ElastixImageFilterImpl ( void )

◆ Execute() [1/2]

Image itk::simple::ElastixImageFilter::Execute ( )

Executes the registration, and returns the result image.

Note: Before executing, the number of moving images must equal the number of fixed images, the number of fixed masks must be either zero, or one, or equal to the number of fixed images, and the number of moving masks must be either zero, or one, or equal to the number of moving images

Examples: Elastix/elx.cxx.

◆ Execute() [2/2]

Image itk::simple::ElastixImageFilter::Execute ( void )

◆ GetDefaultParameterMap() [1/2]

std::map<std::string, std::vector<std::string> > itk::simple::ElastixImageFilter::GetDefaultParameterMap	(	const std::string	transformName,
		const unsigned int	numberOfResolutions = `4`,
		const double	finalGridSpacingInPhysicalUnits = `10.0`
	)

◆ GetDefaultParameterMap() [2/2]

std::map<std::string, std::vector<std::string> > itk::simple::ElastixImageFilter::GetDefaultParameterMap	(	const std::string	transformName,
		const unsigned int	numberOfResolutions = `4`,
		const double	finalGridSpacingInPhysicalUnits = `10.0`
	)

Returns the default parameter map for the specified function arguments (transformName may be "translation", "rigid" , "affine", "nonrigid", or "bspline").

◆ GetFixedImage() [1/4]

VectorOfImage& itk::simple::ElastixImageFilter::GetFixedImage ( )

Retrieves a reference to the container of fixed images.

◆ GetFixedImage() [2/4]

Image& itk::simple::ElastixImageFilter::GetFixedImage ( const unsigned long index )

◆ GetFixedImage() [3/4]

Image& itk::simple::ElastixImageFilter::GetFixedImage ( const unsigned long index )

Retrieves a reference to the fixed image at the specified (zero-based) index.

◆ GetFixedImage() [4/4]

VectorOfImage& itk::simple::ElastixImageFilter::GetFixedImage ( void )

◆ GetFixedMask() [1/4]

VectorOfImage& itk::simple::ElastixImageFilter::GetFixedMask ( )

Retrieves a reference to the container of fixed masks.

◆ GetFixedMask() [2/4]

Image& itk::simple::ElastixImageFilter::GetFixedMask ( const unsigned long index )

◆ GetFixedMask() [3/4]

Image& itk::simple::ElastixImageFilter::GetFixedMask ( const unsigned long index )

Retrieves a reference to the fixed mask at the specified (zero-based) index.

◆ GetFixedMask() [4/4]

VectorOfImage& itk::simple::ElastixImageFilter::GetFixedMask ( void )

◆ GetFixedPointSetFileName() [1/2]

std::string itk::simple::ElastixImageFilter::GetFixedPointSetFileName ( )

Returns the name of the current point set file of points from the fixed image.

◆ GetFixedPointSetFileName() [2/2]

std::string itk::simple::ElastixImageFilter::GetFixedPointSetFileName ( void )

◆ GetInitialTransformParameterFileName() [1/2]

std::string itk::simple::ElastixImageFilter::GetInitialTransformParameterFileName ( )

Returns the initial transform parameter file name.

◆ GetInitialTransformParameterFileName() [2/2]

std::string itk::simple::ElastixImageFilter::GetInitialTransformParameterFileName ( void )

◆ GetLogFileName() [1/2]

std::string itk::simple::ElastixImageFilter::GetLogFileName ( )

Returns the name of the current log file.

◆ GetLogFileName() [2/2]

std::string itk::simple::ElastixImageFilter::GetLogFileName ( void )

◆ GetLogToConsole() [1/2]

bool itk::simple::ElastixImageFilter::GetLogToConsole ( )

Returns whether logging to console is switched on.

◆ GetLogToConsole() [2/2]

bool itk::simple::ElastixImageFilter::GetLogToConsole ( void )

◆ GetLogToFile() [1/2]

bool itk::simple::ElastixImageFilter::GetLogToFile ( )

Returns whether logging to file is switched on.

◆ GetLogToFile() [2/2]

bool itk::simple::ElastixImageFilter::GetLogToFile ( void )

◆ GetMovingImage() [1/4]

VectorOfImage& itk::simple::ElastixImageFilter::GetMovingImage ( )

Retrieves a reference to the moving image at the specified (zero-based) index.

◆ GetMovingImage() [2/4]

Image& itk::simple::ElastixImageFilter::GetMovingImage ( const unsigned long index )

◆ GetMovingImage() [3/4]

Image& itk::simple::ElastixImageFilter::GetMovingImage ( const unsigned long index )

Retrieves a reference to the moving image at the specified (zero-based) index.

◆ GetMovingImage() [4/4]

VectorOfImage& itk::simple::ElastixImageFilter::GetMovingImage ( void )

◆ GetMovingMask() [1/4]

VectorOfImage& itk::simple::ElastixImageFilter::GetMovingMask ( )

Retrieves a reference to the container of moving masks.

◆ GetMovingMask() [2/4]

Image& itk::simple::ElastixImageFilter::GetMovingMask ( const unsigned long index )

◆ GetMovingMask() [3/4]

Image& itk::simple::ElastixImageFilter::GetMovingMask ( const unsigned long index )

Retrieves a reference to the moving mask at the specified (zero-based) index.

◆ GetMovingMask() [4/4]

VectorOfImage& itk::simple::ElastixImageFilter::GetMovingMask ( void )

◆ GetMovingPointSetFileName() [1/2]

std::string itk::simple::ElastixImageFilter::GetMovingPointSetFileName ( )

Returns the name of the current point set file of points from the moving image.

◆ GetMovingPointSetFileName() [2/2]

std::string itk::simple::ElastixImageFilter::GetMovingPointSetFileName ( void )

◆ GetName() [1/2]

std::string itk::simple::ElastixImageFilter::GetName ( ) const

◆ GetName() [2/2]

std::string itk::simple::ElastixImageFilter::GetName ( void ) const

◆ GetNumberOfFixedImages() [1/2]

unsigned int itk::simple::ElastixImageFilter::GetNumberOfFixedImages ( )

◆ GetNumberOfFixedImages() [2/2]

unsigned int itk::simple::ElastixImageFilter::GetNumberOfFixedImages ( )

Returns the number of fixed images.

◆ GetNumberOfFixedMasks() [1/2]

unsigned int itk::simple::ElastixImageFilter::GetNumberOfFixedMasks ( )

◆ GetNumberOfFixedMasks() [2/2]

unsigned int itk::simple::ElastixImageFilter::GetNumberOfFixedMasks ( )

Returns the number of fixed masks.

◆ GetNumberOfMovingImages() [1/2]

unsigned int itk::simple::ElastixImageFilter::GetNumberOfMovingImages ( )

◆ GetNumberOfMovingImages() [2/2]

unsigned int itk::simple::ElastixImageFilter::GetNumberOfMovingImages ( )

Returns the number of moving images.

◆ GetNumberOfMovingMasks() [1/2]

unsigned int itk::simple::ElastixImageFilter::GetNumberOfMovingMasks ( )

◆ GetNumberOfMovingMasks() [2/2]

unsigned int itk::simple::ElastixImageFilter::GetNumberOfMovingMasks ( )

Returns the number of moving masks.

◆ GetNumberOfParameterMaps() [1/2]

unsigned int itk::simple::ElastixImageFilter::GetNumberOfParameterMaps ( )

Returns the number of parameter maps.

◆ GetNumberOfParameterMaps() [2/2]

unsigned int itk::simple::ElastixImageFilter::GetNumberOfParameterMaps ( void )

◆ GetNumberOfThreads() [1/2]

int itk::simple::ElastixImageFilter::GetNumberOfThreads ( )

Returns the current maximum number of threads.

◆ GetNumberOfThreads() [2/2]

int itk::simple::ElastixImageFilter::GetNumberOfThreads ( void )

◆ GetOutputDirectory() [1/2]

std::string itk::simple::ElastixImageFilter::GetOutputDirectory ( )

Returns the current output directory.

◆ GetOutputDirectory() [2/2]

std::string itk::simple::ElastixImageFilter::GetOutputDirectory ( void )

◆ GetParameter() [1/4]

std::vector<std::string> itk::simple::ElastixImageFilter::GetParameter ( const std::string key )

◆ GetParameter() [2/4]

std::vector<std::string> itk::simple::ElastixImageFilter::GetParameter ( const std::string key )

Retrieves the values of the parameter specified by key, when there is only one parameter map.

◆ GetParameter() [3/4]

std::vector<std::string> itk::simple::ElastixImageFilter::GetParameter	(	const unsigned int	index,
		const std::string	key
	)

◆ GetParameter() [4/4]

std::vector<std::string> itk::simple::ElastixImageFilter::GetParameter	(	const unsigned int	index,
		const std::string	key
	)

Retrieves the values of the parameter specified by key, from the parameter map at the specified (zero-based) index.

◆ GetParameterMap() [1/2]

std::vector<std::map<std::string, std::vector<std::string> > > itk::simple::ElastixImageFilter::GetParameterMap ( )

Returns a copy of the parameter maps.

◆ GetParameterMap() [2/2]

std::vector<std::map<std::string, std::vector<std::string> > > itk::simple::ElastixImageFilter::GetParameterMap ( void )

◆ GetParameterMaps()

std::vector<std::map<std::string, std::vector<std::string> > > itk::simple::ElastixImageFilter::GetParameterMaps ( )

inline

Definition at line 304 of file sitkElastixImageFilter.h.

◆ GetResultImage() [1/2]

Image itk::simple::ElastixImageFilter::GetResultImage ( )

Returns the result image.

Examples: Elastix/elx.cxx.

◆ GetResultImage() [2/2]

Image itk::simple::ElastixImageFilter::GetResultImage ( void )

◆ GetTransformParameterMap() [1/4]

std::vector<std::map<std::string, std::vector<std::string> > > itk::simple::ElastixImageFilter::GetTransformParameterMap ( )

Returns all transform parameter maps.

Examples: Elastix/elx.cxx.

◆ GetTransformParameterMap() [2/4]

std::map<std::string, std::vector<std::string> > itk::simple::ElastixImageFilter::GetTransformParameterMap ( const unsigned int index )

◆ GetTransformParameterMap() [3/4]

std::map<std::string, std::vector<std::string> > itk::simple::ElastixImageFilter::GetTransformParameterMap ( const unsigned int index )

Returns the transform parameter map at the specified (zero-based) index.

◆ GetTransformParameterMap() [4/4]

std::vector<std::map<std::string, std::vector<std::string> > > itk::simple::ElastixImageFilter::GetTransformParameterMap ( void )

◆ IsEmpty()

bool itk::simple::ElastixImageFilter::IsEmpty ( const Image & image )

◆ LogToConsoleOff() [1/2]

void itk::simple::ElastixImageFilter::LogToConsoleOff ( )

◆ LogToConsoleOff() [2/2]

Self& itk::simple::ElastixImageFilter::LogToConsoleOff ( )

Switches logging to console off.

◆ LogToConsoleOn() [1/2]

void itk::simple::ElastixImageFilter::LogToConsoleOn ( )

◆ LogToConsoleOn() [2/2]

Self& itk::simple::ElastixImageFilter::LogToConsoleOn ( )

Switches logging to console on.

Examples: Elastix/elx.cxx.

◆ LogToFileOff() [1/2]

Self& itk::simple::ElastixImageFilter::LogToFileOff ( )

Switches logging to file off.

◆ LogToFileOff() [2/2]

void itk::simple::ElastixImageFilter::LogToFileOff ( void )

◆ LogToFileOn() [1/2]

Self& itk::simple::ElastixImageFilter::LogToFileOn ( )

Switches logging to file on.

◆ LogToFileOn() [2/2]

void itk::simple::ElastixImageFilter::LogToFileOn ( void )

◆ PrintParameterMap() [1/6]

Self& itk::simple::ElastixImageFilter::PrintParameterMap ( )

Prints all parameter maps to standard output.

◆ PrintParameterMap() [2/6]

void itk::simple::ElastixImageFilter::PrintParameterMap ( const ParameterMapType parameterMapVector )

◆ PrintParameterMap() [3/6]

Self& itk::simple::ElastixImageFilter::PrintParameterMap ( const ParameterMapType parameterMapVector )

Prints the specified parameter map to standard output.

◆ PrintParameterMap() [4/6]

void itk::simple::ElastixImageFilter::PrintParameterMap ( const ParameterMapVectorType parameterMapVector )

◆ PrintParameterMap() [5/6]

Self& itk::simple::ElastixImageFilter::PrintParameterMap ( const ParameterMapVectorType parameterMapVector )

Prints the specified parameter maps to standard output.

◆ PrintParameterMap() [6/6]

void itk::simple::ElastixImageFilter::PrintParameterMap ( void )

◆ ReadParameterFile() [1/2]

std::map<std::string, std::vector<std::string> > itk::simple::ElastixImageFilter::ReadParameterFile ( const std::string filename )

◆ ReadParameterFile() [2/2]

std::map<std::string, std::vector<std::string> > itk::simple::ElastixImageFilter::ReadParameterFile ( const std::string filename )

Reads the parameter file specified by filename, and returns its content as a parameter map.

◆ RemoveFixedImage() [1/4]

Self& itk::simple::ElastixImageFilter::RemoveFixedImage ( )

Removes all fixed images.

◆ RemoveFixedImage() [2/4]

void itk::simple::ElastixImageFilter::RemoveFixedImage ( const unsigned long index )

◆ RemoveFixedImage() [3/4]

Self& itk::simple::ElastixImageFilter::RemoveFixedImage ( const unsigned long index )

Removes an image at the specified (zero-based) index from the container of fixed images.

◆ RemoveFixedImage() [4/4]

void itk::simple::ElastixImageFilter::RemoveFixedImage ( void )

◆ RemoveFixedMask() [1/4]

Self& itk::simple::ElastixImageFilter::RemoveFixedMask ( )

Removes all fixed masks.

◆ RemoveFixedMask() [2/4]

void itk::simple::ElastixImageFilter::RemoveFixedMask ( const unsigned long index )

◆ RemoveFixedMask() [3/4]

Self& itk::simple::ElastixImageFilter::RemoveFixedMask ( const unsigned long index )

Removes an image at the specified (zero-based) index from the container of fixed masks.

◆ RemoveFixedMask() [4/4]

void itk::simple::ElastixImageFilter::RemoveFixedMask ( void )

◆ RemoveFixedPointSetFileName() [1/2]

Self& itk::simple::ElastixImageFilter::RemoveFixedPointSetFileName ( )

Clears the current point set file name of points from the fixed image.

◆ RemoveFixedPointSetFileName() [2/2]

void itk::simple::ElastixImageFilter::RemoveFixedPointSetFileName ( void )

◆ RemoveInitialTransformParameterFileName() [1/2]

Self& itk::simple::ElastixImageFilter::RemoveInitialTransformParameterFileName ( )

Clears the initial transform parameter file name.

◆ RemoveInitialTransformParameterFileName() [2/2]

void itk::simple::ElastixImageFilter::RemoveInitialTransformParameterFileName ( void )

◆ RemoveLogFileName() [1/2]

Self& itk::simple::ElastixImageFilter::RemoveLogFileName ( )

Clears the name of the current log file.

◆ RemoveLogFileName() [2/2]

void itk::simple::ElastixImageFilter::RemoveLogFileName ( void )

◆ RemoveMovingImage() [1/4]

Self& itk::simple::ElastixImageFilter::RemoveMovingImage ( )

Removes all moving images.

◆ RemoveMovingImage() [2/4]

void itk::simple::ElastixImageFilter::RemoveMovingImage ( const unsigned long index )

◆ RemoveMovingImage() [3/4]

Self& itk::simple::ElastixImageFilter::RemoveMovingImage ( const unsigned long index )

Removes an image at the specified (zero-based) index from the container of moving images.

◆ RemoveMovingImage() [4/4]

void itk::simple::ElastixImageFilter::RemoveMovingImage ( void )

◆ RemoveMovingMask() [1/4]

Self& itk::simple::ElastixImageFilter::RemoveMovingMask ( )

Removes all moving masks.

◆ RemoveMovingMask() [2/4]

void itk::simple::ElastixImageFilter::RemoveMovingMask ( const unsigned long index )

◆ RemoveMovingMask() [3/4]

Self& itk::simple::ElastixImageFilter::RemoveMovingMask ( const unsigned long index )

Removes an image at the specified (zero-based) index from the container of moving masks.

◆ RemoveMovingMask() [4/4]

void itk::simple::ElastixImageFilter::RemoveMovingMask ( void )

◆ RemoveMovingPointSetFileName() [1/2]

Self& itk::simple::ElastixImageFilter::RemoveMovingPointSetFileName ( )

Clears the current point set file name of points from the moving image.

◆ RemoveMovingPointSetFileName() [2/2]

void itk::simple::ElastixImageFilter::RemoveMovingPointSetFileName ( void )

◆ RemoveOutputDirectory() [1/2]

Self& itk::simple::ElastixImageFilter::RemoveOutputDirectory ( )

Clears the name of the current output directory. (Does not remove the actual directory.)

◆ RemoveOutputDirectory() [2/2]

void itk::simple::ElastixImageFilter::RemoveOutputDirectory ( void )

◆ RemoveParameter() [1/4]

void itk::simple::ElastixImageFilter::RemoveParameter ( const std::string key )

◆ RemoveParameter() [2/4]

Self& itk::simple::ElastixImageFilter::RemoveParameter ( const std::string key )

Removes the parameter specified by key from all parameter maps.

◆ RemoveParameter() [3/4]

void itk::simple::ElastixImageFilter::RemoveParameter	(	const unsigned int	index,
		const std::string	key
	)

◆ RemoveParameter() [4/4]

Self& itk::simple::ElastixImageFilter::RemoveParameter	(	const unsigned int	index,
		const std::string	key
	)

Removes the parameter specified by key from the parameter map at the specified (zero-based) index.

◆ SetFixedImage() [1/4]

void itk::simple::ElastixImageFilter::SetFixedImage ( const Image & fixedImage )

◆ SetFixedImage() [2/4]

Self& itk::simple::ElastixImageFilter::SetFixedImage ( const Image & fixedImage )

Sets a fixed image. Stores the image into the container of fixed images.

Examples: Elastix/elx.cxx.

◆ SetFixedImage() [3/4]

void itk::simple::ElastixImageFilter::SetFixedImage ( const VectorOfImage & fixedImages )

◆ SetFixedImage() [4/4]

Self& itk::simple::ElastixImageFilter::SetFixedImage ( const VectorOfImage & fixedImages )

Sets multiple fixed images. Stores the images into the container of fixed images.

◆ SetFixedMask() [1/4]

void itk::simple::ElastixImageFilter::SetFixedMask ( const Image & fixedMask )

◆ SetFixedMask() [2/4]

Self& itk::simple::ElastixImageFilter::SetFixedMask ( const Image & fixedMask )

Sets a fixed mask. Stores the image into the container of fixed masks.

◆ SetFixedMask() [3/4]

void itk::simple::ElastixImageFilter::SetFixedMask ( const VectorOfImage & fixedMasks )

◆ SetFixedMask() [4/4]

Self& itk::simple::ElastixImageFilter::SetFixedMask ( const VectorOfImage & fixedMasks )

Sets multiple fixed masks. Stores the images into the container of fixed masks.

◆ SetFixedPointSetFileName() [1/2]

Self& itk::simple::ElastixImageFilter::SetFixedPointSetFileName ( const std::string fixedPointSetFileName )

Specifies a set of points from the fixed image by a point set file, fixedPointSetFileName.

◆ SetFixedPointSetFileName() [2/2]

void itk::simple::ElastixImageFilter::SetFixedPointSetFileName ( const std::string movingPointSetFileName )

◆ SetInitialTransformParameterFileName() [1/2]

void itk::simple::ElastixImageFilter::SetInitialTransformParameterFileName ( const std::string initialTransformParmaterFileName )

◆ SetInitialTransformParameterFileName() [2/2]

Self& itk::simple::ElastixImageFilter::SetInitialTransformParameterFileName ( const std::string initialTransformParmaterFileName )

Specifies the initial transformation by the specified transform parameter file name.

◆ SetLogFileName() [1/2]

void itk::simple::ElastixImageFilter::SetLogFileName ( const std::string logFileName )

◆ SetLogFileName() [2/2]

Self& itk::simple::ElastixImageFilter::SetLogFileName ( const std::string logFileName )

Sets the name of the current log file.

◆ SetLogToConsole() [1/2]

void itk::simple::ElastixImageFilter::SetLogToConsole ( bool )

◆ SetLogToConsole() [2/2]

Self& itk::simple::ElastixImageFilter::SetLogToConsole ( bool )

Switches logging to console on (true) or off (false), as specified by its function argument.

◆ SetLogToFile() [1/2]

void itk::simple::ElastixImageFilter::SetLogToFile ( const bool logToFile )

◆ SetLogToFile() [2/2]

Self& itk::simple::ElastixImageFilter::SetLogToFile ( const bool logToFile )

Switches logging to file on (true) or off (false), as specified by its function argument.

◆ SetMovingImage() [1/4]

void itk::simple::ElastixImageFilter::SetMovingImage ( const Image & movingImages )

◆ SetMovingImage() [2/4]

Self& itk::simple::ElastixImageFilter::SetMovingImage ( const Image & movingImages )

Sets a moving image. Stores the image into the container of moving images.

Examples: Elastix/elx.cxx.

◆ SetMovingImage() [3/4]

void itk::simple::ElastixImageFilter::SetMovingImage ( const VectorOfImage & movingImage )

◆ SetMovingImage() [4/4]

Self& itk::simple::ElastixImageFilter::SetMovingImage ( const VectorOfImage & movingImage )

Sets multiple moving images. Stores the images into the container of moving images.

◆ SetMovingMask() [1/4]

void itk::simple::ElastixImageFilter::SetMovingMask ( const Image & movingMask )

◆ SetMovingMask() [2/4]

Self& itk::simple::ElastixImageFilter::SetMovingMask ( const Image & movingMask )

Sets a moving mask. Stores the image into the container of moving masks.

◆ SetMovingMask() [3/4]

void itk::simple::ElastixImageFilter::SetMovingMask ( const VectorOfImage & movingMasks )

◆ SetMovingMask() [4/4]

Self& itk::simple::ElastixImageFilter::SetMovingMask ( const VectorOfImage & movingMasks )

Sets multiple moving masks. Stores the images into the container of moving masks.

◆ SetMovingPointSetFileName() [1/2]

void itk::simple::ElastixImageFilter::SetMovingPointSetFileName ( const std::string movingPointSetFileName )

◆ SetMovingPointSetFileName() [2/2]

Self& itk::simple::ElastixImageFilter::SetMovingPointSetFileName ( const std::string movingPointSetFileName )

Specifies a set of points from the moving image by a point set file, movingPointSetFileName.

◆ SetNumberOfThreads() [1/2]

void itk::simple::ElastixImageFilter::SetNumberOfThreads ( int n )

◆ SetNumberOfThreads() [2/2]

Self& itk::simple::ElastixImageFilter::SetNumberOfThreads ( int n )

Sets the maximum number of threads to the specified number n.

Note: As a side effect, it may modify the global maximum number of threads, as it internally calls ITK's MultiThreaderBase.SetGlobalMaximumNumberOfThreads.

◆ SetOutputDirectory() [1/2]

void itk::simple::ElastixImageFilter::SetOutputDirectory ( const std::string outputDirectory )

◆ SetOutputDirectory() [2/2]

Self& itk::simple::ElastixImageFilter::SetOutputDirectory ( const std::string outputDirectory )

Sets the output directory.

◆ SetParameter() [1/8]

void itk::simple::ElastixImageFilter::SetParameter	(	const std::string	key,
		const std::string	value
	)

◆ SetParameter() [2/8]

Self& itk::simple::ElastixImageFilter::SetParameter	(	const std::string	key,
		const std::string	value
	)

Sets the value of the parameter specified by key, in all parameter maps.

◆ SetParameter() [3/8]

void itk::simple::ElastixImageFilter::SetParameter	(	const std::string	key,
		const std::vector< std::string >	value
	)

◆ SetParameter() [4/8]

Self& itk::simple::ElastixImageFilter::SetParameter	(	const std::string	key,
		const std::vector< std::string >	value
	)

Sets the values of the parameter specified by key, in all parameter maps.

◆ SetParameter() [5/8]

void itk::simple::ElastixImageFilter::SetParameter	(	const unsigned int	index,
		const std::string	key,
		const std::string	value
	)

◆ SetParameter() [6/8]

Self& itk::simple::ElastixImageFilter::SetParameter	(	const unsigned int	index,
		const std::string	key,
		const std::string	value
	)

Sets the value of the parameter specified by key, in the parameter map at the specified (zero-based) index.

◆ SetParameter() [7/8]

void itk::simple::ElastixImageFilter::SetParameter	(	const unsigned int	index,
		const std::string	key,
		const std::vector< std::string >	value
	)

◆ SetParameter() [8/8]

Self& itk::simple::ElastixImageFilter::SetParameter	(	const unsigned int	index,
		const std::string	key,
		const std::vector< std::string >	value
	)

Sets the values of the parameter specified by key, in the parameter map at the specified (zero-based) index.

◆ SetParameterMap() [1/6]

void itk::simple::ElastixImageFilter::SetParameterMap ( const std::map< std::string, std::vector< std::string >> parameterMap )

◆ SetParameterMap() [2/6]

Self& itk::simple::ElastixImageFilter::SetParameterMap ( const std::map< std::string, std::vector< std::string >> parameterMap )

Specifies a single parameter map.

◆ SetParameterMap() [3/6]

void itk::simple::ElastixImageFilter::SetParameterMap	(	const std::string	transformName,
		const unsigned int	numberOfResolutions = `4u`,
		const double	finalGridSpacingInPhysicalUnits = `10.0`
	)

◆ SetParameterMap() [4/6]

Self& itk::simple::ElastixImageFilter::SetParameterMap	(	const std::string	transformName,
		const unsigned int	numberOfResolutions = `4u`,
		const double	finalGridSpacingInPhysicalUnits = `10.0`
	)

Specifies the parameter map by a transformName ("translation", "rigid" , "affine", "nonrigid", or "bspline"), and optionally numberOfResolutions and finalGridSpacingInPhysicalUnits.

Examples: Elastix/elx.cxx.

◆ SetParameterMap() [5/6]

void itk::simple::ElastixImageFilter::SetParameterMap ( const std::vector< std::map< std::string, std::vector< std::string >>> parameterMapVector )

◆ SetParameterMap() [6/6]

Self& itk::simple::ElastixImageFilter::SetParameterMap ( const std::vector< std::map< std::string, std::vector< std::string >>> parameterMapVector )

Specifies multiple parameter maps.

◆ SetParameterMaps()

Self& itk::simple::ElastixImageFilter::SetParameterMaps ( const std::vector< std::map< std::string, std::vector< std::string >>> parameterMapVector )

inline

Definition at line 290 of file sitkElastixImageFilter.h.

◆ WriteParameterFile() [1/2]

void itk::simple::ElastixImageFilter::WriteParameterFile	(	const std::map< std::string, std::vector< std::string >>	parameterMap,
		const std::string	filename
	)

◆ WriteParameterFile() [2/2]

Self& itk::simple::ElastixImageFilter::WriteParameterFile	(	const std::map< std::string, std::vector< std::string >>	parameterMap,
		const std::string	filename
	)

Writes a parameter map to the file, specified by filename.

Friends And Related Function Documentation

◆ detail::DualExecuteInternalAddressor< MemberFunctionType >

friend struct detail::DualExecuteInternalAddressor< MemberFunctionType >

friend

Definition at line 240 of file sitkElastixImageFilterImpl.h.

Member Data Documentation

◆ m_DualMemberFactory

std::unique_ptr<detail::DualMemberFunctionFactory<MemberFunctionType> > itk::simple::ElastixImageFilter::m_DualMemberFactory

Definition at line 241 of file sitkElastixImageFilterImpl.h.

◆ m_FixedImages

VectorOfImage itk::simple::ElastixImageFilter::m_FixedImages

Definition at line 243 of file sitkElastixImageFilterImpl.h.

◆ m_FixedMasks

VectorOfImage itk::simple::ElastixImageFilter::m_FixedMasks

Definition at line 245 of file sitkElastixImageFilterImpl.h.

◆ m_FixedPointSetFileName

std::string itk::simple::ElastixImageFilter::m_FixedPointSetFileName

Definition at line 250 of file sitkElastixImageFilterImpl.h.

◆ m_InitialTransformParameterMapFileName

std::string itk::simple::ElastixImageFilter::m_InitialTransformParameterMapFileName

Definition at line 249 of file sitkElastixImageFilterImpl.h.

◆ m_LogFileName

std::string itk::simple::ElastixImageFilter::m_LogFileName

Definition at line 257 of file sitkElastixImageFilterImpl.h.

◆ m_LogToConsole

bool itk::simple::ElastixImageFilter::m_LogToConsole

Definition at line 260 of file sitkElastixImageFilterImpl.h.

◆ m_LogToFile

bool itk::simple::ElastixImageFilter::m_LogToFile

Definition at line 259 of file sitkElastixImageFilterImpl.h.

◆ m_MovingImages

VectorOfImage itk::simple::ElastixImageFilter::m_MovingImages

Definition at line 244 of file sitkElastixImageFilterImpl.h.

◆ m_MovingMasks

VectorOfImage itk::simple::ElastixImageFilter::m_MovingMasks

Definition at line 246 of file sitkElastixImageFilterImpl.h.

◆ m_MovingPointSetFileName

std::string itk::simple::ElastixImageFilter::m_MovingPointSetFileName

Definition at line 251 of file sitkElastixImageFilterImpl.h.

◆ m_NumberOfThreads

int itk::simple::ElastixImageFilter::m_NumberOfThreads

Definition at line 262 of file sitkElastixImageFilterImpl.h.

◆ m_OutputDirectory

std::string itk::simple::ElastixImageFilter::m_OutputDirectory

Definition at line 256 of file sitkElastixImageFilterImpl.h.

◆ m_ParameterMapVector

ParameterMapVectorType itk::simple::ElastixImageFilter::m_ParameterMapVector

Definition at line 253 of file sitkElastixImageFilterImpl.h.

◆ m_Pimple

const std::unique_ptr<ElastixImageFilterImpl> itk::simple::ElastixImageFilter::m_Pimple

private

Definition at line 423 of file sitkElastixImageFilter.h.

◆ m_ResultImage

Image itk::simple::ElastixImageFilter::m_ResultImage

Definition at line 247 of file sitkElastixImageFilterImpl.h.

◆ m_TransformParameterMapVector

ParameterMapVectorType itk::simple::ElastixImageFilter::m_TransformParameterMapVector

Definition at line 254 of file sitkElastixImageFilterImpl.h.

The documentation for this class was generated from the following files: