SimpleITK
2.0.0
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a convenient class to convert a label image to a label map and valuate the statistics attributes at once More...
#include <sitkLabelIntensityStatisticsImageFilter.h>
Public Types | |
using | PixelIDTypeList = IntegerPixelIDTypeList |
using | Self = LabelIntensityStatisticsImageFilter |
Public Types inherited from itk::simple::ImageFilter | |
using | Self = ImageFilter |
Public Types inherited from itk::simple::ProcessObject | |
using | Self = ProcessObject |
Public Member Functions | |
Self & | ComputeFeretDiameterOff () |
Self & | ComputeFeretDiameterOn () |
Self & | ComputePerimeterOff () |
Self & | ComputePerimeterOn () |
void | Execute (const Image &image, const Image &featureImage) |
double | GetBackgroundValue () const |
std::vector< unsigned int > | GetBoundingBox (int64_t label) const |
std::vector< double > | GetCenterOfGravity (int64_t label) const |
std::vector< double > | GetCentroid (int64_t label) const |
bool | GetComputeFeretDiameter () const |
bool | GetComputePerimeter () const |
double | GetElongation (int64_t label) const |
std::vector< double > | GetEquivalentEllipsoidDiameter (int64_t label) const |
double | GetEquivalentSphericalPerimeter (int64_t label) const |
double | GetEquivalentSphericalRadius (int64_t label) const |
double | GetFeretDiameter (int64_t label) const |
double | GetFlatness (int64_t label) const |
double | GetKurtosis (int64_t label) const |
std::vector< int64_t > | GetLabels () const |
double | GetMaximum (int64_t label) const |
std::vector< uint32_t > | GetMaximumIndex (int64_t label) const |
double | GetMean (int64_t label) const |
double | GetMedian (int64_t label) const |
double | GetMinimum (int64_t label) const |
std::vector< uint32_t > | GetMinimumIndex (int64_t label) const |
std::string | GetName () const |
uint32_t | GetNumberOfBins () const |
uint64_t | GetNumberOfLabels () |
uint64_t | GetNumberOfPixels (int64_t label) const |
uint64_t | GetNumberOfPixelsOnBorder (int64_t label) const |
double | GetPerimeter (int64_t label) const |
double | GetPerimeterOnBorder (int64_t label) const |
double | GetPerimeterOnBorderRatio (int64_t label) const |
double | GetPhysicalSize (int64_t label) const |
std::vector< double > | GetPrincipalAxes (int64_t label) const |
std::vector< double > | GetPrincipalMoments (int64_t label) const |
std::vector< unsigned int > | GetRegion (int64_t label) const |
double | GetRoundness (int64_t label) const |
double | GetSkewness (int64_t label) const |
double | GetStandardDeviation (int64_t label) const |
double | GetSum (int64_t label) const |
double | GetVariance (int64_t label) const |
double | GetWeightedElongation (int64_t label) const |
double | GetWeightedFlatness (int64_t label) const |
std::vector< double > | GetWeightedPrincipalAxes (int64_t label) const |
std::vector< double > | GetWeightedPrincipalMoments (int64_t label) const |
bool | HasLabel (int64_t label) |
LabelIntensityStatisticsImageFilter () | |
Self & | SetBackgroundValue (double BackgroundValue) |
Self & | SetComputeFeretDiameter (bool ComputeFeretDiameter) |
Self & | SetComputePerimeter (bool ComputePerimeter) |
Self & | SetNumberOfBins (uint32_t NumberOfBins) |
std::string | ToString () const |
virtual | ~LabelIntensityStatisticsImageFilter () |
Public Member Functions inherited from itk::simple::ImageFilter | |
ImageFilter () | |
virtual | ~ImageFilter ()=0 |
Public Member Functions inherited from itk::simple::ProcessObject | |
virtual void | Abort () |
virtual int | AddCommand (itk::simple::EventEnum event, const std::function< void()> &func) |
Directly add a callback to observe an event. More... | |
virtual int | AddCommand (itk::simple::EventEnum event, itk::simple::Command &cmd) |
Add a Command Object to observer the event. More... | |
virtual float | GetProgress () const |
An Active Measurement of the progress of execution. More... | |
virtual bool | HasCommand (itk::simple::EventEnum event) const |
Query of this object has any registered commands for event. More... | |
ProcessObject () | |
virtual void | RemoveAllCommands () |
Remove all registered commands. More... | |
virtual | ~ProcessObject () |
virtual void | DebugOn () |
virtual void | DebugOff () |
virtual bool | GetDebug () const |
virtual void | SetDebug (bool debugFlag) |
virtual void | SetNumberOfThreads (unsigned int n) |
virtual unsigned int | GetNumberOfThreads () const |
virtual void | SetNumberOfWorkUnits (unsigned int n) |
virtual unsigned int | GetNumberOfWorkUnits () const |
Private Types | |
using | MemberFunctionType = void(Self::*)(const Image *image, const Image *featureImage) |
Private Member Functions | |
template<class TImageType1 , class TImageType2 > | |
void | DualExecuteInternal (const Image *image, const Image *featureImage) |
Private Attributes | |
double | m_BackgroundValue {0} |
bool | m_ComputeFeretDiameter {false} |
bool | m_ComputePerimeter {true} |
std::unique_ptr< detail::DualMemberFunctionFactory< MemberFunctionType > > | m_DualMemberFactory |
itk::ProcessObject * | m_Filter {nullptr} |
std::vector< int64_t > | m_Labels {std::vector<int64_t>()} |
uint32_t | m_NumberOfBins {128u} |
std::function< std::vector< unsigned int >int64_t)> | m_pfGetBoundingBox |
std::function< std::vector< double >int64_t)> | m_pfGetCenterOfGravity |
std::function< std::vector< double >int64_t)> | m_pfGetCentroid |
std::function< double(int64_t)> | m_pfGetElongation |
std::function< std::vector< double >int64_t)> | m_pfGetEquivalentEllipsoidDiameter |
std::function< double(int64_t)> | m_pfGetEquivalentSphericalPerimeter |
std::function< double(int64_t)> | m_pfGetEquivalentSphericalRadius |
std::function< double(int64_t)> | m_pfGetFeretDiameter |
std::function< double(int64_t)> | m_pfGetFlatness |
std::function< double(int64_t)> | m_pfGetKurtosis |
std::function< double(int64_t)> | m_pfGetMaximum |
std::function< std::vector< uint32_t >int64_t)> | m_pfGetMaximumIndex |
std::function< double(int64_t)> | m_pfGetMean |
std::function< double(int64_t)> | m_pfGetMedian |
std::function< double(int64_t)> | m_pfGetMinimum |
std::function< std::vector< uint32_t >int64_t)> | m_pfGetMinimumIndex |
std::function< uint64_t(int64_t)> | m_pfGetNumberOfPixels |
std::function< uint64_t(int64_t)> | m_pfGetNumberOfPixelsOnBorder |
std::function< double(int64_t)> | m_pfGetPerimeter |
std::function< double(int64_t)> | m_pfGetPerimeterOnBorder |
std::function< double(int64_t)> | m_pfGetPerimeterOnBorderRatio |
std::function< double(int64_t)> | m_pfGetPhysicalSize |
std::function< std::vector< double >int64_t)> | m_pfGetPrincipalAxes |
std::function< std::vector< double >int64_t)> | m_pfGetPrincipalMoments |
std::function< std::vector< unsigned int >int64_t)> | m_pfGetRegion |
std::function< double(int64_t)> | m_pfGetRoundness |
std::function< double(int64_t)> | m_pfGetSkewness |
std::function< double(int64_t)> | m_pfGetStandardDeviation |
std::function< double(int64_t)> | m_pfGetSum |
std::function< double(int64_t)> | m_pfGetVariance |
std::function< double(int64_t)> | m_pfGetWeightedElongation |
std::function< double(int64_t)> | m_pfGetWeightedFlatness |
std::function< std::vector< double >int64_t)> | m_pfGetWeightedPrincipalAxes |
std::function< std::vector< double >int64_t)> | m_pfGetWeightedPrincipalMoments |
Friends | |
struct | detail::DualExecuteInternalAddressor< MemberFunctionType > |
Additional Inherited Members | |
Static Public Member Functions inherited from itk::simple::ProcessObject | |
static bool | GetGlobalDefaultDebug () |
static void | GlobalDefaultDebugOff () |
static void | GlobalDefaultDebugOn () |
static void | SetGlobalDefaultDebug (bool debugFlag) |
static void | GlobalWarningDisplayOn () |
static void | GlobalWarningDisplayOff () |
static void | SetGlobalWarningDisplay (bool flag) |
static bool | GetGlobalWarningDisplay () |
static double | GetGlobalDefaultCoordinateTolerance () |
Access the global tolerance to determine congruent spaces. More... | |
static void | SetGlobalDefaultCoordinateTolerance (double) |
Access the global tolerance to determine congruent spaces. More... | |
static double | GetGlobalDefaultDirectionTolerance () |
Access the global tolerance to determine congruent spaces. More... | |
static void | SetGlobalDefaultDirectionTolerance (double) |
Access the global tolerance to determine congruent spaces. More... | |
static bool | SetGlobalDefaultThreader (const std::string &threader) |
Set/Get the default threader used for process objects. More... | |
static std::string | GetGlobalDefaultThreader () |
Set/Get the default threader used for process objects. More... | |
static void | SetGlobalDefaultNumberOfThreads (unsigned int n) |
static unsigned int | GetGlobalDefaultNumberOfThreads () |
Set/Get the default threader used for process objects. More... | |
Protected Member Functions inherited from itk::simple::ImageFilter | |
void | CheckImageMatchingDimension (const Image &image1, const Image &image2, const std::string &image2Name) |
void | CheckImageMatchingPixelType (const Image &image1, const Image &image2, const std::string &image2Name) |
void | CheckImageMatchingSize (const Image &image1, const Image &image2, const std::string &image2Name) |
Protected Member Functions inherited from itk::simple::ProcessObject | |
virtual unsigned long | AddITKObserver (const itk::EventObject &, itk::Command *) |
virtual itk::ProcessObject * | GetActiveProcess () |
virtual void | OnActiveProcessDelete () |
virtual void | onCommandDelete (const itk::simple::Command *cmd) noexcept |
virtual void | PreUpdate (itk::ProcessObject *p) |
virtual void | RemoveITKObserver (EventCommand &e) |
Protected Member Functions inherited from itk::simple::NonCopyable | |
NonCopyable ()=default | |
NonCopyable (const NonCopyable &)=delete | |
NonCopyable & | operator= (const NonCopyable &)=delete |
Static Protected Member Functions inherited from itk::simple::ImageFilter | |
template<class TImageType > | |
static void | FixNonZeroIndex (TImageType *img) |
Static Protected Member Functions inherited from itk::simple::ProcessObject | |
template<class TImageType > | |
static TImageType::ConstPointer | CastImageToITK (const Image &img) |
template<class TPixelType , unsigned int VImageDimension, unsigned int VLength, template< typename, unsigned int > class TVector> | |
static Image | CastITKToImage (itk::Image< TVector< TPixelType, VLength >, VImageDimension > *img) |
template<class TImageType > | |
static Image | CastITKToImage (TImageType *img) |
static const itk::EventObject & | GetITKEventObject (EventEnum e) |
template<typename T > | |
static std::ostream & | ToStringHelper (std::ostream &os, const T &v) |
static std::ostream & | ToStringHelper (std::ostream &os, const char &v) |
static std::ostream & | ToStringHelper (std::ostream &os, const signed char &v) |
static std::ostream & | ToStringHelper (std::ostream &os, const unsigned char &v) |
a convenient class to convert a label image to a label map and valuate the statistics attributes at once
This implementation was taken from the Insight Journal paper: https://hdl.handle.net/1926/584 or http://www.insight-journal.org/browse/publication/176
Definition at line 48 of file sitkLabelIntensityStatisticsImageFilter.h.
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Setup for member function dispatching
Definition at line 447 of file sitkLabelIntensityStatisticsImageFilter.h.
Define the pixels types supported by this filter
Definition at line 60 of file sitkLabelIntensityStatisticsImageFilter.h.
Definition at line 50 of file sitkLabelIntensityStatisticsImageFilter.h.
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Destructor
itk::simple::LabelIntensityStatisticsImageFilter::LabelIntensityStatisticsImageFilter | ( | ) |
Default Constructor that takes no arguments and initializes default parameters
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Definition at line 81 of file sitkLabelIntensityStatisticsImageFilter.h.
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Set the value of ComputeFeretDiameter to true or false respectfully.
Definition at line 80 of file sitkLabelIntensityStatisticsImageFilter.h.
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Definition at line 95 of file sitkLabelIntensityStatisticsImageFilter.h.
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Set the value of ComputePerimeter to true or false respectfully.
Definition at line 94 of file sitkLabelIntensityStatisticsImageFilter.h.
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void itk::simple::LabelIntensityStatisticsImageFilter::Execute | ( | const Image & | image, |
const Image & | featureImage | ||
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Execute the filter on the input image
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Set/Get the value used as "background" in the output image. Defaults to NumericTraits<PixelType>::NonpositiveMin() .
Definition at line 72 of file sitkLabelIntensityStatisticsImageFilter.h.
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This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.
Definition at line 118 of file sitkLabelIntensityStatisticsImageFilter.h.
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This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.
Definition at line 288 of file sitkLabelIntensityStatisticsImageFilter.h.
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This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.
Definition at line 136 of file sitkLabelIntensityStatisticsImageFilter.h.
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Set/Get whether the maximum Feret diameter should be computed or not. The defaut value is false, because of the high computation time required.
Definition at line 86 of file sitkLabelIntensityStatisticsImageFilter.h.
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Set/Get whether the perimeter should be computed or not. The defaut value is false, because of the high computation time required.
Definition at line 100 of file sitkLabelIntensityStatisticsImageFilter.h.
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This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.
Definition at line 145 of file sitkLabelIntensityStatisticsImageFilter.h.
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This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.
Definition at line 154 of file sitkLabelIntensityStatisticsImageFilter.h.
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This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.
Definition at line 163 of file sitkLabelIntensityStatisticsImageFilter.h.
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This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.
Definition at line 172 of file sitkLabelIntensityStatisticsImageFilter.h.
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This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.
Definition at line 181 of file sitkLabelIntensityStatisticsImageFilter.h.
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This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.
Definition at line 190 of file sitkLabelIntensityStatisticsImageFilter.h.
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This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.
Definition at line 297 of file sitkLabelIntensityStatisticsImageFilter.h.
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This is a measurement. Its value is updated in the Execute methods, so the value will only be valid after an execution.
Definition at line 198 of file sitkLabelIntensityStatisticsImageFilter.h.
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This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.
Definition at line 306 of file sitkLabelIntensityStatisticsImageFilter.h.
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This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.
Definition at line 315 of file sitkLabelIntensityStatisticsImageFilter.h.
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This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.
Definition at line 324 of file sitkLabelIntensityStatisticsImageFilter.h.
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This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.
Definition at line 333 of file sitkLabelIntensityStatisticsImageFilter.h.
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This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.
Definition at line 342 of file sitkLabelIntensityStatisticsImageFilter.h.
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This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.
Definition at line 351 of file sitkLabelIntensityStatisticsImageFilter.h.
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Name of this class
Implements itk::simple::ProcessObject.
Definition at line 427 of file sitkLabelIntensityStatisticsImageFilter.h.
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Set/Get the number of bins in the histogram. Note that the histogram is used to compute the median value, and that this option may have an effect on the value of the median.
Definition at line 110 of file sitkLabelIntensityStatisticsImageFilter.h.
uint64_t itk::simple::LabelIntensityStatisticsImageFilter::GetNumberOfLabels | ( | ) |
Return the number of labels after execution.
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This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.
Definition at line 207 of file sitkLabelIntensityStatisticsImageFilter.h.
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This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.
Definition at line 216 of file sitkLabelIntensityStatisticsImageFilter.h.
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This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.
Definition at line 225 of file sitkLabelIntensityStatisticsImageFilter.h.
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This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.
Definition at line 234 of file sitkLabelIntensityStatisticsImageFilter.h.
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This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.
Definition at line 243 of file sitkLabelIntensityStatisticsImageFilter.h.
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This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.
Definition at line 252 of file sitkLabelIntensityStatisticsImageFilter.h.
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This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.
Definition at line 261 of file sitkLabelIntensityStatisticsImageFilter.h.
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This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.
Definition at line 270 of file sitkLabelIntensityStatisticsImageFilter.h.
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This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.
Definition at line 127 of file sitkLabelIntensityStatisticsImageFilter.h.
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This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.
Definition at line 279 of file sitkLabelIntensityStatisticsImageFilter.h.
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This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.
Definition at line 360 of file sitkLabelIntensityStatisticsImageFilter.h.
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This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.
Definition at line 369 of file sitkLabelIntensityStatisticsImageFilter.h.
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This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.
Definition at line 378 of file sitkLabelIntensityStatisticsImageFilter.h.
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This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.
Definition at line 387 of file sitkLabelIntensityStatisticsImageFilter.h.
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This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.
Definition at line 396 of file sitkLabelIntensityStatisticsImageFilter.h.
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This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.
Definition at line 405 of file sitkLabelIntensityStatisticsImageFilter.h.
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This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.
Definition at line 414 of file sitkLabelIntensityStatisticsImageFilter.h.
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This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.
Definition at line 423 of file sitkLabelIntensityStatisticsImageFilter.h.
bool itk::simple::LabelIntensityStatisticsImageFilter::HasLabel | ( | int64_t | label | ) |
Does the specified label exist? Can only be called after a call a call to Update().
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Set/Get the value used as "background" in the output image. Defaults to NumericTraits<PixelType>::NonpositiveMin() .
Definition at line 67 of file sitkLabelIntensityStatisticsImageFilter.h.
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Set/Get whether the maximum Feret diameter should be computed or not. The defaut value is false, because of the high computation time required.
Definition at line 77 of file sitkLabelIntensityStatisticsImageFilter.h.
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Set/Get whether the perimeter should be computed or not. The defaut value is false, because of the high computation time required.
Definition at line 91 of file sitkLabelIntensityStatisticsImageFilter.h.
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Set/Get the number of bins in the histogram. Note that the histogram is used to compute the median value, and that this option may have an effect on the value of the median.
Definition at line 105 of file sitkLabelIntensityStatisticsImageFilter.h.
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Print ourselves out
Reimplemented from itk::simple::ProcessObject.
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Definition at line 449 of file sitkLabelIntensityStatisticsImageFilter.h.
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Definition at line 458 of file sitkLabelIntensityStatisticsImageFilter.h.
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Definition at line 460 of file sitkLabelIntensityStatisticsImageFilter.h.
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Definition at line 462 of file sitkLabelIntensityStatisticsImageFilter.h.
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Definition at line 453 of file sitkLabelIntensityStatisticsImageFilter.h.
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Definition at line 538 of file sitkLabelIntensityStatisticsImageFilter.h.
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Definition at line 485 of file sitkLabelIntensityStatisticsImageFilter.h.
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Definition at line 464 of file sitkLabelIntensityStatisticsImageFilter.h.
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Definition at line 467 of file sitkLabelIntensityStatisticsImageFilter.h.
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Definition at line 505 of file sitkLabelIntensityStatisticsImageFilter.h.
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Definition at line 471 of file sitkLabelIntensityStatisticsImageFilter.h.
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Definition at line 473 of file sitkLabelIntensityStatisticsImageFilter.h.
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Definition at line 475 of file sitkLabelIntensityStatisticsImageFilter.h.
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Definition at line 477 of file sitkLabelIntensityStatisticsImageFilter.h.
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Definition at line 479 of file sitkLabelIntensityStatisticsImageFilter.h.
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Definition at line 481 of file sitkLabelIntensityStatisticsImageFilter.h.
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Definition at line 483 of file sitkLabelIntensityStatisticsImageFilter.h.
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Definition at line 507 of file sitkLabelIntensityStatisticsImageFilter.h.
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Definition at line 509 of file sitkLabelIntensityStatisticsImageFilter.h.
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Definition at line 511 of file sitkLabelIntensityStatisticsImageFilter.h.
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Definition at line 513 of file sitkLabelIntensityStatisticsImageFilter.h.
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Definition at line 515 of file sitkLabelIntensityStatisticsImageFilter.h.
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Definition at line 517 of file sitkLabelIntensityStatisticsImageFilter.h.
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Definition at line 519 of file sitkLabelIntensityStatisticsImageFilter.h.
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Definition at line 487 of file sitkLabelIntensityStatisticsImageFilter.h.
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Definition at line 489 of file sitkLabelIntensityStatisticsImageFilter.h.
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Definition at line 491 of file sitkLabelIntensityStatisticsImageFilter.h.
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Definition at line 493 of file sitkLabelIntensityStatisticsImageFilter.h.
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Definition at line 495 of file sitkLabelIntensityStatisticsImageFilter.h.
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Definition at line 497 of file sitkLabelIntensityStatisticsImageFilter.h.
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Definition at line 499 of file sitkLabelIntensityStatisticsImageFilter.h.
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Definition at line 501 of file sitkLabelIntensityStatisticsImageFilter.h.
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Definition at line 469 of file sitkLabelIntensityStatisticsImageFilter.h.
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Definition at line 503 of file sitkLabelIntensityStatisticsImageFilter.h.
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Definition at line 521 of file sitkLabelIntensityStatisticsImageFilter.h.
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Definition at line 523 of file sitkLabelIntensityStatisticsImageFilter.h.
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Definition at line 525 of file sitkLabelIntensityStatisticsImageFilter.h.
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Definition at line 527 of file sitkLabelIntensityStatisticsImageFilter.h.
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Definition at line 529 of file sitkLabelIntensityStatisticsImageFilter.h.
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Definition at line 531 of file sitkLabelIntensityStatisticsImageFilter.h.
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Definition at line 533 of file sitkLabelIntensityStatisticsImageFilter.h.
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Definition at line 535 of file sitkLabelIntensityStatisticsImageFilter.h.