SimpleITK
2.0.0
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Remove local minima not connected to the boundary of the image. More...
#include <sitkGrayscaleFillholeImageFilter.h>
Public Types | |
using | PixelIDTypeList = BasicPixelIDTypeList |
using | Self = GrayscaleFillholeImageFilter |
Public Types inherited from itk::simple::ImageFilter | |
using | Self = ImageFilter |
Public Types inherited from itk::simple::ProcessObject | |
using | Self = ProcessObject |
Public Member Functions | |
Image | Execute (const Image &image1) |
Self & | FullyConnectedOff () |
Self & | FullyConnectedOn () |
bool | GetFullyConnected () const |
std::string | GetName () const |
GrayscaleFillholeImageFilter () | |
Self & | SetFullyConnected (bool FullyConnected) |
std::string | ToString () const |
virtual | ~GrayscaleFillholeImageFilter () |
Public Member Functions inherited from itk::simple::ImageFilter | |
ImageFilter () | |
virtual | ~ImageFilter ()=0 |
Public Member Functions inherited from itk::simple::ProcessObject | |
virtual void | Abort () |
virtual int | AddCommand (itk::simple::EventEnum event, const std::function< void()> &func) |
Directly add a callback to observe an event. More... | |
virtual int | AddCommand (itk::simple::EventEnum event, itk::simple::Command &cmd) |
Add a Command Object to observer the event. More... | |
virtual float | GetProgress () const |
An Active Measurement of the progress of execution. More... | |
virtual bool | HasCommand (itk::simple::EventEnum event) const |
Query of this object has any registered commands for event. More... | |
ProcessObject () | |
virtual void | RemoveAllCommands () |
Remove all registered commands. More... | |
virtual | ~ProcessObject () |
virtual void | DebugOn () |
virtual void | DebugOff () |
virtual bool | GetDebug () const |
virtual void | SetDebug (bool debugFlag) |
virtual void | SetNumberOfThreads (unsigned int n) |
virtual unsigned int | GetNumberOfThreads () const |
virtual void | SetNumberOfWorkUnits (unsigned int n) |
virtual unsigned int | GetNumberOfWorkUnits () const |
Private Types | |
using | MemberFunctionType = Image(Self::*)(const Image &image1) |
Private Member Functions | |
template<class TImageType > | |
Image | ExecuteInternal (const Image &image1) |
Private Attributes | |
bool | m_FullyConnected {false} |
std::unique_ptr< detail::MemberFunctionFactory< MemberFunctionType > > | m_MemberFactory |
Friends | |
struct | detail::MemberFunctionAddressor< MemberFunctionType > |
Additional Inherited Members | |
Static Public Member Functions inherited from itk::simple::ProcessObject | |
static bool | GetGlobalDefaultDebug () |
static void | GlobalDefaultDebugOff () |
static void | GlobalDefaultDebugOn () |
static void | SetGlobalDefaultDebug (bool debugFlag) |
static void | GlobalWarningDisplayOn () |
static void | GlobalWarningDisplayOff () |
static void | SetGlobalWarningDisplay (bool flag) |
static bool | GetGlobalWarningDisplay () |
static double | GetGlobalDefaultCoordinateTolerance () |
Access the global tolerance to determine congruent spaces. More... | |
static void | SetGlobalDefaultCoordinateTolerance (double) |
Access the global tolerance to determine congruent spaces. More... | |
static double | GetGlobalDefaultDirectionTolerance () |
Access the global tolerance to determine congruent spaces. More... | |
static void | SetGlobalDefaultDirectionTolerance (double) |
Access the global tolerance to determine congruent spaces. More... | |
static bool | SetGlobalDefaultThreader (const std::string &threader) |
Set/Get the default threader used for process objects. More... | |
static std::string | GetGlobalDefaultThreader () |
Set/Get the default threader used for process objects. More... | |
static void | SetGlobalDefaultNumberOfThreads (unsigned int n) |
static unsigned int | GetGlobalDefaultNumberOfThreads () |
Set/Get the default threader used for process objects. More... | |
Protected Member Functions inherited from itk::simple::ImageFilter | |
void | CheckImageMatchingDimension (const Image &image1, const Image &image2, const std::string &image2Name) |
void | CheckImageMatchingPixelType (const Image &image1, const Image &image2, const std::string &image2Name) |
void | CheckImageMatchingSize (const Image &image1, const Image &image2, const std::string &image2Name) |
Protected Member Functions inherited from itk::simple::ProcessObject | |
virtual unsigned long | AddITKObserver (const itk::EventObject &, itk::Command *) |
virtual itk::ProcessObject * | GetActiveProcess () |
virtual void | OnActiveProcessDelete () |
virtual void | onCommandDelete (const itk::simple::Command *cmd) noexcept |
virtual void | PreUpdate (itk::ProcessObject *p) |
virtual void | RemoveITKObserver (EventCommand &e) |
Protected Member Functions inherited from itk::simple::NonCopyable | |
NonCopyable ()=default | |
NonCopyable (const NonCopyable &)=delete | |
NonCopyable & | operator= (const NonCopyable &)=delete |
Static Protected Member Functions inherited from itk::simple::ImageFilter | |
template<class TImageType > | |
static void | FixNonZeroIndex (TImageType *img) |
Static Protected Member Functions inherited from itk::simple::ProcessObject | |
template<class TImageType > | |
static TImageType::ConstPointer | CastImageToITK (const Image &img) |
template<class TPixelType , unsigned int VImageDimension, unsigned int VLength, template< typename, unsigned int > class TVector> | |
static Image | CastITKToImage (itk::Image< TVector< TPixelType, VLength >, VImageDimension > *img) |
template<class TImageType > | |
static Image | CastITKToImage (TImageType *img) |
static const itk::EventObject & | GetITKEventObject (EventEnum e) |
template<typename T > | |
static std::ostream & | ToStringHelper (std::ostream &os, const T &v) |
static std::ostream & | ToStringHelper (std::ostream &os, const char &v) |
static std::ostream & | ToStringHelper (std::ostream &os, const signed char &v) |
static std::ostream & | ToStringHelper (std::ostream &os, const unsigned char &v) |
Remove local minima not connected to the boundary of the image.
GrayscaleFillholeImageFilter fills holes in a grayscale image. Holes are local minima in the grayscale topography that are not connected to boundaries of the image. Gray level values adjacent to a hole are extrapolated across the hole.
This filter is used to smooth over local minima without affecting the values of local maxima. If you take the difference between the output of this filter and the original image (and perhaps threshold the difference above a small value), you'll obtain a map of the local minima.
This filter uses the ReconstructionByErosionImageFilter . It provides its own input as the "mask" input to the geodesic erosion. The "marker" image for the geodesic erosion is constructed such that boundary pixels match the boundary pixels of the input image and the interior pixels are set to the maximum pixel value in the input image.
Geodesic morphology and the Fillhole algorithm is described in Chapter 6 of Pierre Soille's book "Morphological Image Analysis: Principles and Applications", Second Edition, Springer, 2003.
Definition at line 54 of file sitkGrayscaleFillholeImageFilter.h.
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Setup for member function dispatching
Definition at line 98 of file sitkGrayscaleFillholeImageFilter.h.
Define the pixels types supported by this filter
Definition at line 66 of file sitkGrayscaleFillholeImageFilter.h.
Definition at line 56 of file sitkGrayscaleFillholeImageFilter.h.
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Destructor
itk::simple::GrayscaleFillholeImageFilter::GrayscaleFillholeImageFilter | ( | ) |
Default Constructor that takes no arguments and initializes default parameters
Execute the filter on the input image
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Definition at line 76 of file sitkGrayscaleFillholeImageFilter.h.
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Set the value of FullyConnected to true or false respectfully.
Definition at line 75 of file sitkGrayscaleFillholeImageFilter.h.
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Set/Get whether the connected components are defined strictly by face connectivity or by face+edge+vertex connectivity. Default is FullyConnectedOff. For objects that are 1 pixel wide, use FullyConnectedOn.
Definition at line 81 of file sitkGrayscaleFillholeImageFilter.h.
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Name of this class
Implements itk::simple::ProcessObject.
Definition at line 84 of file sitkGrayscaleFillholeImageFilter.h.
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Set/Get whether the connected components are defined strictly by face connectivity or by face+edge+vertex connectivity. Default is FullyConnectedOff. For objects that are 1 pixel wide, use FullyConnectedOn.
Definition at line 72 of file sitkGrayscaleFillholeImageFilter.h.
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Print ourselves out
Reimplemented from itk::simple::ProcessObject.
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Definition at line 102 of file sitkGrayscaleFillholeImageFilter.h.
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Definition at line 108 of file sitkGrayscaleFillholeImageFilter.h.
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Definition at line 104 of file sitkGrayscaleFillholeImageFilter.h.