SimpleITK  1.1.0
sitkSymmetricForcesDemonsRegistrationFilter.h
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5 * Licensed under the Apache License, Version 2.0 (the "License");
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14 * See the License for the specific language governing permissions and
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18 #ifndef sitkSymmetricForcesDemonsRegistrationFilter_h
19 #define sitkSymmetricForcesDemonsRegistrationFilter_h
20 
21 /*
22  * WARNING: DO NOT EDIT THIS FILE!
23  * THIS FILE IS AUTOMATICALLY GENERATED BY THE SIMPLEITK BUILD PROCESS.
24  * Please look at sitkImageFilterTemplate.h.in to make changes.
25  */
26 
27 #include <memory>
28 
29 #include "sitkBasicFilters.h"
30 #include "sitkImageFilter.h"
31 
32 namespace itk {
33  namespace simple {
34 
65  public:
67 
70 
74 
77 
78 
79 
83  SITK_RETURN_SELF_TYPE_HEADER SetStandardDeviations ( const std::vector<double> & StandardDeviations ) { this->m_StandardDeviations = StandardDeviations; return *this; }
84 
86  SITK_RETURN_SELF_TYPE_HEADER SetStandardDeviations( double value ) { this->m_StandardDeviations = std::vector<double>(3, value); return *this; }
87 
88 
92  std::vector<double> GetStandardDeviations() const { return this->m_StandardDeviations; }
93 
96  SITK_RETURN_SELF_TYPE_HEADER SetNumberOfIterations ( uint32_t NumberOfIterations ) { this->m_NumberOfIterations = NumberOfIterations; return *this; }
97 
100  uint32_t GetNumberOfIterations() const { return this->m_NumberOfIterations; }
101 
104  SITK_RETURN_SELF_TYPE_HEADER SetMaximumRMSError ( double MaximumRMSError ) { this->m_MaximumRMSError = MaximumRMSError; return *this; }
105 
108  double GetMaximumRMSError() const { return this->m_MaximumRMSError; }
109 
113  SITK_RETURN_SELF_TYPE_HEADER SetSmoothDisplacementField ( bool SmoothDisplacementField ) { this->m_SmoothDisplacementField = SmoothDisplacementField; return *this; }
114 
116  SITK_RETURN_SELF_TYPE_HEADER SmoothDisplacementFieldOn() { return this->SetSmoothDisplacementField(true); }
117  SITK_RETURN_SELF_TYPE_HEADER SmoothDisplacementFieldOff() { return this->SetSmoothDisplacementField(false); }
118 
122  bool GetSmoothDisplacementField() const { return this->m_SmoothDisplacementField; }
123 
127  SITK_RETURN_SELF_TYPE_HEADER SetSmoothUpdateField ( bool SmoothUpdateField ) { this->m_SmoothUpdateField = SmoothUpdateField; return *this; }
128 
130  SITK_RETURN_SELF_TYPE_HEADER SmoothUpdateFieldOn() { return this->SetSmoothUpdateField(true); }
131  SITK_RETURN_SELF_TYPE_HEADER SmoothUpdateFieldOff() { return this->SetSmoothUpdateField(false); }
132 
136  bool GetSmoothUpdateField() const { return this->m_SmoothUpdateField; }
137 
141  SITK_RETURN_SELF_TYPE_HEADER SetUpdateFieldStandardDeviations ( const std::vector<double> & UpdateFieldStandardDeviations ) { this->m_UpdateFieldStandardDeviations = UpdateFieldStandardDeviations; return *this; }
142 
144  SITK_RETURN_SELF_TYPE_HEADER SetUpdateFieldStandardDeviations( double value ) { this->m_UpdateFieldStandardDeviations = std::vector<double>(3, value); return *this; }
145 
146 
150  std::vector<double> GetUpdateFieldStandardDeviations() const { return this->m_UpdateFieldStandardDeviations; }
151 
155  SITK_RETURN_SELF_TYPE_HEADER SetMaximumKernelWidth ( unsigned int MaximumKernelWidth ) { this->m_MaximumKernelWidth = MaximumKernelWidth; return *this; }
156 
160  unsigned int GetMaximumKernelWidth() const { return this->m_MaximumKernelWidth; }
161 
165  SITK_RETURN_SELF_TYPE_HEADER SetMaximumError ( double MaximumError ) { this->m_MaximumError = MaximumError; return *this; }
166 
170  double GetMaximumError() const { return this->m_MaximumError; }
171 
175  SITK_RETURN_SELF_TYPE_HEADER SetIntensityDifferenceThreshold ( double IntensityDifferenceThreshold ) { this->m_IntensityDifferenceThreshold = IntensityDifferenceThreshold; return *this; }
176 
179  double GetIntensityDifferenceThreshold() const { return this->m_IntensityDifferenceThreshold; }
180 
183  SITK_RETURN_SELF_TYPE_HEADER SetUseImageSpacing ( bool UseImageSpacing ) { this->m_UseImageSpacing = UseImageSpacing; return *this; }
184 
186  SITK_RETURN_SELF_TYPE_HEADER UseImageSpacingOn() { return this->SetUseImageSpacing(true); }
187  SITK_RETURN_SELF_TYPE_HEADER UseImageSpacingOff() { return this->SetUseImageSpacing(false); }
188 
191  bool GetUseImageSpacing() const { return this->m_UseImageSpacing; }
199  uint32_t GetElapsedIterations() const { return this->m_pfGetElapsedIterations(); };
200 
207  double GetRMSChange() const { return this->m_RMSChange; };
208 
216  double GetMetric() const { return this->m_pfGetMetric(); };
217 
219  std::string GetName() const { return std::string ("SymmetricForcesDemonsRegistrationFilter"); }
220 
222  std::string ToString() const;
223 
224 
226  Image Execute ( const Image & fixedImage, const Image & movingImage, const Image & initialDisplacementField );
227  Image Execute ( const Image & fixedImage, const Image & movingImage );
228 
229 
231  Image Execute ( const Image & fixedImage, const Image & movingImage, const Image & initialDisplacementField, const std::vector<double> & standardDeviations, uint32_t numberOfIterations, double maximumRMSError, bool smoothDisplacementField, bool smoothUpdateField, const std::vector<double> & updateFieldStandardDeviations, unsigned int maximumKernelWidth, double maximumError, double intensityDifferenceThreshold, bool useImageSpacing );
232  Image Execute ( const Image & fixedImage, const Image & movingImage, const std::vector<double> & standardDeviations, uint32_t numberOfIterations, double maximumRMSError, bool smoothDisplacementField, bool smoothUpdateField, const std::vector<double> & updateFieldStandardDeviations, unsigned int maximumKernelWidth, double maximumError, double intensityDifferenceThreshold, bool useImageSpacing );
233 
234  private:
235 
238  typedef Image (Self::*MemberFunctionType)( const Image * fixedImage, const Image * movingImage, const Image * initialDisplacementField );
239  template <class TImageType> Image ExecuteInternal ( const Image * fixedImage, const Image * movingImage, const Image * initialDisplacementField );
240 
241 
242  friend struct detail::MemberFunctionAddressor<MemberFunctionType>;
243 
244  nsstd::auto_ptr<detail::MemberFunctionFactory<MemberFunctionType> > m_MemberFactory;
245 
246 
247  std::vector<double> m_StandardDeviations;
248  /* Number of iterations to run */
250  /* Value of RMS change below which the filter should stop. This is a convergence criterion. */
254  std::vector<double> m_UpdateFieldStandardDeviations;
255  unsigned int m_MaximumKernelWidth;
259 
260  nsstd::function<uint32_t()> m_pfGetElapsedIterations;
261 
262  double m_RMSChange;
263 
264  nsstd::function<double()> m_pfGetMetric;
265 
266  // Holder of process object for active measurements
268  };
269 
270 
271  }
272 }
273 #endif
itk::simple::SymmetricForcesDemonsRegistrationFilter::SetIntensityDifferenceThreshold
Self & SetIntensityDifferenceThreshold(double IntensityDifferenceThreshold)
Definition: sitkSymmetricForcesDemonsRegistrationFilter.h:175
itk::simple::Image
The main Image class for SimpleITK.
Definition: sitkImage.h:54
sitkBasicFilters.h
itk::simple::SymmetricForcesDemonsRegistrationFilter::m_MaximumError
double m_MaximumError
Definition: sitkSymmetricForcesDemonsRegistrationFilter.h:256
itk::simple::SymmetricForcesDemonsRegistrationFilter::SetMaximumKernelWidth
Self & SetMaximumKernelWidth(unsigned int MaximumKernelWidth)
Definition: sitkSymmetricForcesDemonsRegistrationFilter.h:155
itk::simple::SymmetricForcesDemonsRegistrationFilter::GetMaximumRMSError
double GetMaximumRMSError() const
Definition: sitkSymmetricForcesDemonsRegistrationFilter.h:108
itk::simple::SymmetricForcesDemonsRegistrationFilter::m_MaximumRMSError
double m_MaximumRMSError
Definition: sitkSymmetricForcesDemonsRegistrationFilter.h:251
itk::simple::SymmetricForcesDemonsRegistrationFilter::GetMaximumError
double GetMaximumError() const
Definition: sitkSymmetricForcesDemonsRegistrationFilter.h:170
itk::simple::SymmetricForcesDemonsRegistrationFilter::m_pfGetMetric
nsstd::function< double()> m_pfGetMetric
Definition: sitkSymmetricForcesDemonsRegistrationFilter.h:264
itk::simple::SymmetricForcesDemonsRegistrationFilter::GetUpdateFieldStandardDeviations
std::vector< double > GetUpdateFieldStandardDeviations() const
Definition: sitkSymmetricForcesDemonsRegistrationFilter.h:150
itk::simple::SymmetricForcesDemonsRegistrationFilter::SetSmoothUpdateField
Self & SetSmoothUpdateField(bool SmoothUpdateField)
Definition: sitkSymmetricForcesDemonsRegistrationFilter.h:127
itk::simple::SymmetricForcesDemonsRegistrationFilter::GetNumberOfIterations
uint32_t GetNumberOfIterations() const
Definition: sitkSymmetricForcesDemonsRegistrationFilter.h:100
itk::simple::SymmetricForcesDemonsRegistrationFilter::PixelIDTypeList
BasicPixelIDTypeList PixelIDTypeList
Definition: sitkSymmetricForcesDemonsRegistrationFilter.h:76
itk::simple::detail::MemberFunctionAddressor
Definition: sitkDetail.h:32
itk::simple::SymmetricForcesDemonsRegistrationFilter::UseImageSpacingOff
Self & UseImageSpacingOff()
Definition: sitkSymmetricForcesDemonsRegistrationFilter.h:187
itk::simple::SymmetricForcesDemonsRegistrationFilter::m_pfGetElapsedIterations
nsstd::function< uint32_t()> m_pfGetElapsedIterations
Definition: sitkSymmetricForcesDemonsRegistrationFilter.h:260
itk::simple::SymmetricForcesDemonsRegistrationFilter::SetUpdateFieldStandardDeviations
Self & SetUpdateFieldStandardDeviations(double value)
Definition: sitkSymmetricForcesDemonsRegistrationFilter.h:144
itk::simple::SymmetricForcesDemonsRegistrationFilter::SetStandardDeviations
Self & SetStandardDeviations(const std::vector< double > &StandardDeviations)
Definition: sitkSymmetricForcesDemonsRegistrationFilter.h:83
itk::simple::SymmetricForcesDemonsRegistrationFilter::m_NumberOfIterations
uint32_t m_NumberOfIterations
Definition: sitkSymmetricForcesDemonsRegistrationFilter.h:249
itk::simple::SymmetricForcesDemonsRegistrationFilter::SmoothUpdateFieldOff
Self & SmoothUpdateFieldOff()
Definition: sitkSymmetricForcesDemonsRegistrationFilter.h:131
itk::simple::SymmetricForcesDemonsRegistrationFilter
Deformably register two images using the demons algorithm.
Definition: sitkSymmetricForcesDemonsRegistrationFilter.h:64
itk::simple::BasicPixelIDTypeList
typelist::MakeTypeList< BasicPixelID< int8_t >, BasicPixelID< uint8_t >, BasicPixelID< int16_t >, BasicPixelID< uint16_t >, BasicPixelID< int32_t >, BasicPixelID< uint32_t >, BasicPixelID< float >, BasicPixelID< double > >::Type BasicPixelIDTypeList
Definition: sitkPixelIDTypeLists.h:53
sitkImageFilter.h
itk::simple::SymmetricForcesDemonsRegistrationFilter::GetSmoothUpdateField
bool GetSmoothUpdateField() const
Definition: sitkSymmetricForcesDemonsRegistrationFilter.h:136
itk::simple::SymmetricForcesDemonsRegistrationFilter::GetName
std::string GetName() const
Definition: sitkSymmetricForcesDemonsRegistrationFilter.h:219
itk::simple::SymmetricForcesDemonsRegistrationFilter::GetMaximumKernelWidth
unsigned int GetMaximumKernelWidth() const
Definition: sitkSymmetricForcesDemonsRegistrationFilter.h:160
itk::simple::SymmetricForcesDemonsRegistrationFilter::m_IntensityDifferenceThreshold
double m_IntensityDifferenceThreshold
Definition: sitkSymmetricForcesDemonsRegistrationFilter.h:257
itk::simple::SymmetricForcesDemonsRegistrationFilter::m_MaximumKernelWidth
unsigned int m_MaximumKernelWidth
Definition: sitkSymmetricForcesDemonsRegistrationFilter.h:255
itk::simple::SymmetricForcesDemonsRegistrationFilter::GetElapsedIterations
uint32_t GetElapsedIterations() const
Number of iterations run.
Definition: sitkSymmetricForcesDemonsRegistrationFilter.h:199
itk::simple::SymmetricForcesDemonsRegistrationFilter::SmoothUpdateFieldOn
Self & SmoothUpdateFieldOn()
Definition: sitkSymmetricForcesDemonsRegistrationFilter.h:130
itk::simple::SymmetricForcesDemonsRegistrationFilter::SetMaximumError
Self & SetMaximumError(double MaximumError)
Definition: sitkSymmetricForcesDemonsRegistrationFilter.h:165
itk::simple::SymmetricForcesDemonsRegistrationFilter::GetRMSChange
double GetRMSChange() const
Definition: sitkSymmetricForcesDemonsRegistrationFilter.h:207
itk::simple::SymmetricForcesDemonsRegistrationFilter::m_UpdateFieldStandardDeviations
std::vector< double > m_UpdateFieldStandardDeviations
Definition: sitkSymmetricForcesDemonsRegistrationFilter.h:254
itk::simple::SymmetricForcesDemonsRegistrationFilter::SetUseImageSpacing
Self & SetUseImageSpacing(bool UseImageSpacing)
Definition: sitkSymmetricForcesDemonsRegistrationFilter.h:183
itk::simple::SymmetricForcesDemonsRegistrationFilter::SetSmoothDisplacementField
Self & SetSmoothDisplacementField(bool SmoothDisplacementField)
Definition: sitkSymmetricForcesDemonsRegistrationFilter.h:113
itk::simple::SymmetricForcesDemonsRegistrationFilter::m_SmoothDisplacementField
bool m_SmoothDisplacementField
Definition: sitkSymmetricForcesDemonsRegistrationFilter.h:252
itk::simple::SymmetricForcesDemonsRegistrationFilter::UseImageSpacingOn
Self & UseImageSpacingOn()
Definition: sitkSymmetricForcesDemonsRegistrationFilter.h:186
itk::simple::SymmetricForcesDemonsRegistrationFilter::SmoothDisplacementFieldOff
Self & SmoothDisplacementFieldOff()
Definition: sitkSymmetricForcesDemonsRegistrationFilter.h:117
itk::simple::SymmetricForcesDemonsRegistrationFilter::SmoothDisplacementFieldOn
Self & SmoothDisplacementFieldOn()
Definition: sitkSymmetricForcesDemonsRegistrationFilter.h:116
itk::simple::SymmetricForcesDemonsRegistrationFilter::GetMetric
double GetMetric() const
Definition: sitkSymmetricForcesDemonsRegistrationFilter.h:216
itk::simple::SymmetricForcesDemonsRegistrationFilter::m_UseImageSpacing
bool m_UseImageSpacing
Definition: sitkSymmetricForcesDemonsRegistrationFilter.h:258
itk::simple::SymmetricForcesDemonsRegistrationFilter::m_Filter
itk::ProcessObject * m_Filter
Definition: sitkSymmetricForcesDemonsRegistrationFilter.h:267
SITKBasicFilters_EXPORT
#define SITKBasicFilters_EXPORT
Definition: sitkBasicFilters.h:50
itk::simple::SymmetricForcesDemonsRegistrationFilter::m_SmoothUpdateField
bool m_SmoothUpdateField
Definition: sitkSymmetricForcesDemonsRegistrationFilter.h:253
itk::simple::SymmetricForcesDemonsRegistrationFilter::GetSmoothDisplacementField
bool GetSmoothDisplacementField() const
Definition: sitkSymmetricForcesDemonsRegistrationFilter.h:122
itk::simple::SymmetricForcesDemonsRegistrationFilter::m_StandardDeviations
std::vector< double > m_StandardDeviations
Definition: sitkSymmetricForcesDemonsRegistrationFilter.h:247
itk::simple::SymmetricForcesDemonsRegistrationFilter::GetIntensityDifferenceThreshold
double GetIntensityDifferenceThreshold() const
Definition: sitkSymmetricForcesDemonsRegistrationFilter.h:179
itk::simple::SymmetricForcesDemonsRegistrationFilter::GetStandardDeviations
std::vector< double > GetStandardDeviations() const
Definition: sitkSymmetricForcesDemonsRegistrationFilter.h:92
itk::simple::SymmetricForcesDemonsRegistrationFilter::SetMaximumRMSError
Self & SetMaximumRMSError(double MaximumRMSError)
Definition: sitkSymmetricForcesDemonsRegistrationFilter.h:104
itk
itk::simple::SymmetricForcesDemonsRegistrationFilter::GetUseImageSpacing
bool GetUseImageSpacing() const
Definition: sitkSymmetricForcesDemonsRegistrationFilter.h:191
itk::ProcessObject
itk::simple::SymmetricForcesDemonsRegistrationFilter::m_RMSChange
double m_RMSChange
Definition: sitkSymmetricForcesDemonsRegistrationFilter.h:262
itk::simple::ImageFilter
The base interface for SimpleITK filters that take one input image.
Definition: sitkImageFilter.h:37
itk::simple::ProcessObject
Base class for SimpleITK classes based on ProcessObject.
Definition: sitkProcessObject.h:50
itk::simple::SymmetricForcesDemonsRegistrationFilter::SetUpdateFieldStandardDeviations
Self & SetUpdateFieldStandardDeviations(const std::vector< double > &UpdateFieldStandardDeviations)
Definition: sitkSymmetricForcesDemonsRegistrationFilter.h:141
itk::simple::SymmetricForcesDemonsRegistrationFilter::SetNumberOfIterations
Self & SetNumberOfIterations(uint32_t NumberOfIterations)
Definition: sitkSymmetricForcesDemonsRegistrationFilter.h:96
itk::uint32_t
::uint32_t uint32_t
itk::simple::SymmetricForcesDemonsRegistrationFilter::m_MemberFactory
nsstd::auto_ptr< detail::MemberFunctionFactory< MemberFunctionType > > m_MemberFactory
Definition: sitkSymmetricForcesDemonsRegistrationFilter.h:244
itk::simple::SymmetricForcesDemonsRegistrationFilter::SetStandardDeviations
Self & SetStandardDeviations(double value)
Definition: sitkSymmetricForcesDemonsRegistrationFilter.h:86
itk::simple::SymmetricForcesDemonsRegistrationFilter::Self
SymmetricForcesDemonsRegistrationFilter Self
Definition: sitkSymmetricForcesDemonsRegistrationFilter.h:66