Produce a binary image where foreground is the regional minima of the input image. More...

#include <sitkRegionalMinimaImageFilter.h>

Inheritance diagram for itk::simple::RegionalMinimaImageFilter:

Collaboration diagram for itk::simple::RegionalMinimaImageFilter:

Public Types
typedef ScalarPixelIDTypeList	PixelIDTypeList

typedef RegionalMinimaImageFilter	Self

Public Types inherited from itk::simple::ImageFilter< 1 >
typedef ImageFilter	Self

Public Types inherited from itk::simple::ProcessObject
typedef ProcessObject	Self

Public Member Functions
Image	Execute (const Image &image1)

Image	Execute (const Image &image1, double backgroundValue, double foregroundValue, bool fullyConnected, bool flatIsMinima)

Self &	FlatIsMinimaOff ()

Self &	FlatIsMinimaOn ()

Self &	FullyConnectedOff ()

Self &	FullyConnectedOn ()

double	GetBackgroundValue () const

bool	GetFlatIsMinima () const

double	GetForegroundValue () const

bool	GetFullyConnected () const

std::string	GetName () const

	RegionalMinimaImageFilter ()

Self &	SetBackgroundValue (double BackgroundValue)

Self &	SetFlatIsMinima (bool FlatIsMinima)

Self &	SetForegroundValue (double ForegroundValue)

Self &	SetFullyConnected (bool FullyConnected)

std::string	ToString () const

	~RegionalMinimaImageFilter ()

Public Member Functions inherited from itk::simple::ImageFilter< 1 >
	ImageFilter ()

virtual	~ImageFilter ()=0

Public Member Functions inherited from itk::simple::ProcessObject
virtual void	Abort ()

virtual int	AddCommand (itk::simple::EventEnum event, itk::simple::Command &cmd)
	Add a Command Object to observer the event. More...

virtual float	GetProgress () const
	An Active Measurement of the progress of execution. More...

virtual bool	HasCommand (itk::simple::EventEnum event) const
	Query of this object has any registered commands for event. More...

	ProcessObject ()

virtual void	RemoveAllCommands ()
	Remove all registered commands. More...

virtual	~ProcessObject ()

virtual void	DebugOn ()

virtual void	DebugOff ()

virtual bool	GetDebug () const

virtual void	SetDebug (bool debugFlag)

virtual void	SetNumberOfThreads (unsigned int n)

virtual unsigned int	GetNumberOfThreads () const

Private Types
typedef Image(Self::*	MemberFunctionType) (const Image &image1)

Private Member Functions
template<class TImageType >
Image	ExecuteInternal (const Image &image1)

Private Attributes
double	m_BackgroundValue

bool	m_FlatIsMinima

double	m_ForegroundValue

bool	m_FullyConnected

nsstd::auto_ptr< detail::MemberFunctionFactory< MemberFunctionType > >	m_MemberFactory

Friends
struct	detail::MemberFunctionAddressor< MemberFunctionType >

Additional Inherited Members
Static Public Member Functions inherited from itk::simple::ProcessObject
static bool	GetGlobalDefaultDebug ()

static void	GlobalDefaultDebugOff ()

static void	GlobalDefaultDebugOn ()

static void	SetGlobalDefaultDebug (bool debugFlag)

static void	GlobalWarningDisplayOn ()

static void	GlobalWarningDisplayOff ()

static void	SetGlobalWarningDisplay (bool flag)

static bool	GetGlobalWarningDisplay ()

static void	SetGlobalDefaultNumberOfThreads (unsigned int n)

static unsigned int	GetGlobalDefaultNumberOfThreads ()

static double	GetGlobalDefaultCoordinateTolerance ()
	Access the global tolerance to determine congruent spaces. More...

static void	SetGlobalDefaultCoordinateTolerance (double)
	Access the global tolerance to determine congruent spaces. More...

static double	GetGlobalDefaultDirectionTolerance ()
	Access the global tolerance to determine congruent spaces. More...

static void	SetGlobalDefaultDirectionTolerance (double)
	Access the global tolerance to determine congruent spaces. More...

Protected Member Functions inherited from itk::simple::ProcessObject
virtual unsigned long	AddITKObserver (const itk::EventObject &, itk::Command *)

virtual itk::ProcessObject *	GetActiveProcess ()

virtual void	OnActiveProcessDelete ()

virtual void	onCommandDelete (const itk::simple::Command *cmd) throw ()

virtual void	PreUpdate (itk::ProcessObject *p)

virtual void	RemoveITKObserver (EventCommand &e)

Protected Member Functions inherited from itk::simple::NonCopyable
	NonCopyable ()

Static Protected Member Functions inherited from itk::simple::ImageFilter< 1 >
static void	FixNonZeroIndex (TImageType *img)

Static Protected Member Functions inherited from itk::simple::ProcessObject
template<class TImageType >
static TImageType::ConstPointer	CastImageToITK (const Image &img)

template<class TImageType >
static Image	CastITKToImage (TImageType *img)

template<class TPixelType , unsigned int VImageDimension, unsigned int VLength, template< typename, unsigned int > class TVector>
static Image	CastITKToImage (itk::Image< TVector< TPixelType, VLength >, VImageDimension > *img)

static const itk::EventObject &	GetITKEventObject (EventEnum e)

template<typename T >
static std::ostream &	ToStringHelper (std::ostream &os, const T &v)

static std::ostream &	ToStringHelper (std::ostream &os, const char &v)

static std::ostream &	ToStringHelper (std::ostream &os, const signed char &v)

static std::ostream &	ToStringHelper (std::ostream &os, const unsigned char &v)

Detailed Description

Produce a binary image where foreground is the regional minima of the input image.

Regional minima are flat zones surrounded by pixels of greater value.

If the input image is constant, the entire image can be considered as a minima or not. The SetFlatIsMinima() method let the user choose which behavior to use.

This class was contribtued to the Insight Journal by

Author: Gaetan Lehmann. Biologie du Developpement et de la Reproduction, INRA de Jouy-en-Josas, France. https://hdl.handle.net/1926/153

See also: RegionalMaximaImageFilter; ValuedRegionalMinimaImageFilter; HConcaveImageFilter

Wiki Examples:

All Examples

RegionalMinimaImageFilter
See also
itk::simple::RegionalMinima for the procedural interface

itk::RegionalMinimaImageFilter for the Doxygen on the original ITK class.

Definition at line 58 of file sitkRegionalMinimaImageFilter.h.

Member Typedef Documentation

typedef Image(Self::* itk::simple::RegionalMinimaImageFilter::MemberFunctionType) (const Image &image1)

private

Setup for member function dispatching

Definition at line 140 of file sitkRegionalMinimaImageFilter.h.

typedef ScalarPixelIDTypeList itk::simple::RegionalMinimaImageFilter::PixelIDTypeList

Define the pixels types supported by this filter

Definition at line 70 of file sitkRegionalMinimaImageFilter.h.

typedef RegionalMinimaImageFilter itk::simple::RegionalMinimaImageFilter::Self

Definition at line 60 of file sitkRegionalMinimaImageFilter.h.

Constructor & Destructor Documentation

itk::simple::RegionalMinimaImageFilter::RegionalMinimaImageFilter ( )

Default Constructor that takes no arguments and initializes default parameters

itk::simple::RegionalMinimaImageFilter::~RegionalMinimaImageFilter ( )

Destructor

Member Function Documentation

Image itk::simple::RegionalMinimaImageFilter::Execute ( const Image & image1 )

Execute the filter on the input image

Image itk::simple::RegionalMinimaImageFilter::Execute	(	const Image &	image1,
		double	backgroundValue,
		double	foregroundValue,
		bool	fullyConnected,
		bool	flatIsMinima
	)

Execute the filter on the input image with the given parameters

template<class TImageType >

Image itk::simple::RegionalMinimaImageFilter::ExecuteInternal ( const Image & image1 )

private

Self& itk::simple::RegionalMinimaImageFilter::FlatIsMinimaOff ( )

inline

Definition at line 115 of file sitkRegionalMinimaImageFilter.h.

Self& itk::simple::RegionalMinimaImageFilter::FlatIsMinimaOn ( )

inline

Set the value of FlatIsMinima to true or false respectfully.

Definition at line 114 of file sitkRegionalMinimaImageFilter.h.

Self& itk::simple::RegionalMinimaImageFilter::FullyConnectedOff ( )

inline

Definition at line 101 of file sitkRegionalMinimaImageFilter.h.

Self& itk::simple::RegionalMinimaImageFilter::FullyConnectedOn ( )

inline

Set the value of FullyConnected to true or false respectfully.

Definition at line 100 of file sitkRegionalMinimaImageFilter.h.

double itk::simple::RegionalMinimaImageFilter::GetBackgroundValue ( ) const

inline

Set/Get the value used as "background" in the output image. Defaults to NumericTraits<PixelType>::NonpositiveMin() .

Definition at line 82 of file sitkRegionalMinimaImageFilter.h.

bool itk::simple::RegionalMinimaImageFilter::GetFlatIsMinima ( ) const

inline

Set/Get wether a flat image must be considered as a minima or not. Defaults to true.

Definition at line 120 of file sitkRegionalMinimaImageFilter.h.

double itk::simple::RegionalMinimaImageFilter::GetForegroundValue ( ) const

inline

Set/Get the value in the output image to consider as "foreground". Defaults to maximum value of PixelType.

Definition at line 92 of file sitkRegionalMinimaImageFilter.h.

bool itk::simple::RegionalMinimaImageFilter::GetFullyConnected ( ) const

inline

Set/Get whether the connected components are defined strictly by face connectivity or by face+edge+vertex connectivity. Default is FullyConnectedOff. For objects that are 1 pixel wide, use FullyConnectedOn.

Definition at line 106 of file sitkRegionalMinimaImageFilter.h.

std::string itk::simple::RegionalMinimaImageFilter::GetName ( ) const

inlinevirtual

Name of this class

Implements itk::simple::ProcessObject.

Definition at line 122 of file sitkRegionalMinimaImageFilter.h.

Self& itk::simple::RegionalMinimaImageFilter::SetBackgroundValue ( double BackgroundValue )

inline

Set/Get the value used as "background" in the output image. Defaults to NumericTraits<PixelType>::NonpositiveMin() .

Definition at line 77 of file sitkRegionalMinimaImageFilter.h.

Self& itk::simple::RegionalMinimaImageFilter::SetFlatIsMinima ( bool FlatIsMinima )

inline

Set/Get wether a flat image must be considered as a minima or not. Defaults to true.

Definition at line 111 of file sitkRegionalMinimaImageFilter.h.

Self& itk::simple::RegionalMinimaImageFilter::SetForegroundValue ( double ForegroundValue )

inline

Set/Get the value in the output image to consider as "foreground". Defaults to maximum value of PixelType.

Definition at line 87 of file sitkRegionalMinimaImageFilter.h.

Self& itk::simple::RegionalMinimaImageFilter::SetFullyConnected ( bool FullyConnected )

inline

Set/Get whether the connected components are defined strictly by face connectivity or by face+edge+vertex connectivity. Default is FullyConnectedOff. For objects that are 1 pixel wide, use FullyConnectedOn.

Definition at line 97 of file sitkRegionalMinimaImageFilter.h.

std::string itk::simple::RegionalMinimaImageFilter::ToString ( ) const

virtual

Print ourselves out

Reimplemented from itk::simple::ProcessObject.