Converts a label image to a label map and valuates the shape attributes. More...

#include <sitkLabelShapeStatisticsImageFilter.h>

Inheritance diagram for itk::simple::LabelShapeStatisticsImageFilter:

Collaboration diagram for itk::simple::LabelShapeStatisticsImageFilter:

Public Types
typedef IntegerPixelIDTypeList	PixelIDTypeList

typedef LabelShapeStatisticsImageFilter	Self

Public Types inherited from itk::simple::ImageFilter< 1 >
typedef ImageFilter	Self

Public Types inherited from itk::simple::ProcessObject
typedef ProcessObject	Self

Public Member Functions
Self &	ComputeFeretDiameterOff ()

Self &	ComputeFeretDiameterOn ()

Self &	ComputePerimeterOff ()

Self &	ComputePerimeterOn ()

void	Execute (const Image &image1)

void	Execute (const Image &image1, double backgroundValue, bool computeFeretDiameter, bool computePerimeter)

double	GetBackgroundValue () const

std::vector< unsigned int >	GetBoundingBox (int64_t label) const

std::vector< double >	GetCentroid (int64_t label) const

bool	GetComputeFeretDiameter () const

bool	GetComputePerimeter () const

double	GetElongation (int64_t label) const

std::vector< double >	GetEquivalentEllipsoidDiameter (int64_t label) const

double	GetEquivalentSphericalPerimeter (int64_t label) const

double	GetEquivalentSphericalRadius (int64_t label) const

double	GetFeretDiameter (int64_t label) const

double	GetFlatness (int64_t label) const

std::vector< int64_t >	GetLabels () const

std::string	GetName () const

uint64_t	GetNumberOfLabels ()

uint64_t	GetNumberOfPixels (int64_t label) const

uint64_t	GetNumberOfPixelsOnBorder (int64_t label) const

double	GetPerimeter (int64_t label) const

double	GetPerimeterOnBorder (int64_t label) const

double	GetPerimeterOnBorderRatio (int64_t label) const

double	GetPhysicalSize (int64_t label) const

std::vector< double >	GetPrincipalAxes (int64_t label) const

std::vector< double >	GetPrincipalMoments (int64_t label) const

double	GetRoundness (int64_t label) const

double	HasLabel (int64_t label)

	LabelShapeStatisticsImageFilter ()

Self &	SetBackgroundValue (double BackgroundValue)

Self &	SetComputeFeretDiameter (bool ComputeFeretDiameter)

Self &	SetComputePerimeter (bool ComputePerimeter)

std::string	ToString () const

	~LabelShapeStatisticsImageFilter ()

Public Member Functions inherited from itk::simple::ImageFilter< 1 >
	ImageFilter ()

virtual	~ImageFilter ()=0

Public Member Functions inherited from itk::simple::ProcessObject
virtual void	Abort ()

virtual int	AddCommand (itk::simple::EventEnum event, itk::simple::Command &cmd)
	Add a Command Object to observer the event. More...

virtual float	GetProgress () const
	An Active Measurement of the progress of execution. More...

virtual bool	HasCommand (itk::simple::EventEnum event) const
	Query of this object has any registered commands for event. More...

	ProcessObject ()

virtual void	RemoveAllCommands ()
	Remove all registered commands. More...

virtual	~ProcessObject ()

virtual void	DebugOn ()

virtual void	DebugOff ()

virtual bool	GetDebug () const

virtual void	SetDebug (bool debugFlag)

virtual void	SetNumberOfThreads (unsigned int n)

virtual unsigned int	GetNumberOfThreads () const

Private Types
typedef void(Self::*	MemberFunctionType) (const Image &image1)

Private Member Functions
template<class TImageType >
void	ExecuteInternal (const Image &image1)

Private Attributes
double	m_BackgroundValue

bool	m_ComputeFeretDiameter

bool	m_ComputePerimeter

itk::ProcessObject *	m_Filter

std::vector< int64_t >	m_Labels

nsstd::auto_ptr< detail::MemberFunctionFactory< MemberFunctionType > >	m_MemberFactory

nsstd::function< std::vector< unsigned int >int64_t)>	m_pfGetBoundingBox

nsstd::function< std::vector< double >int64_t)>	m_pfGetCentroid

nsstd::function< double(int64_t)>	m_pfGetElongation

nsstd::function< std::vector< double >int64_t)>	m_pfGetEquivalentEllipsoidDiameter

nsstd::function< double(int64_t)>	m_pfGetEquivalentSphericalPerimeter

nsstd::function< double(int64_t)>	m_pfGetEquivalentSphericalRadius

nsstd::function< double(int64_t)>	m_pfGetFeretDiameter

nsstd::function< double(int64_t)>	m_pfGetFlatness

nsstd::function< uint64_t(int64_t)>	m_pfGetNumberOfPixels

nsstd::function< uint64_t(int64_t)>	m_pfGetNumberOfPixelsOnBorder

nsstd::function< double(int64_t)>	m_pfGetPerimeter

nsstd::function< double(int64_t)>	m_pfGetPerimeterOnBorder

nsstd::function< double(int64_t)>	m_pfGetPerimeterOnBorderRatio

nsstd::function< double(int64_t)>	m_pfGetPhysicalSize

nsstd::function< std::vector< double >int64_t)>	m_pfGetPrincipalAxes

nsstd::function< std::vector< double >int64_t)>	m_pfGetPrincipalMoments

nsstd::function< double(int64_t)>	m_pfGetRoundness

Friends
struct	detail::MemberFunctionAddressor< MemberFunctionType >

Additional Inherited Members
Static Public Member Functions inherited from itk::simple::ProcessObject
static bool	GetGlobalDefaultDebug ()

static void	GlobalDefaultDebugOff ()

static void	GlobalDefaultDebugOn ()

static void	SetGlobalDefaultDebug (bool debugFlag)

static void	GlobalWarningDisplayOn ()

static void	GlobalWarningDisplayOff ()

static void	SetGlobalWarningDisplay (bool flag)

static bool	GetGlobalWarningDisplay ()

static void	SetGlobalDefaultNumberOfThreads (unsigned int n)

static unsigned int	GetGlobalDefaultNumberOfThreads ()

static double	GetGlobalDefaultCoordinateTolerance ()
	Access the global tolerance to determine congruent spaces. More...

static void	SetGlobalDefaultCoordinateTolerance (double)
	Access the global tolerance to determine congruent spaces. More...

static double	GetGlobalDefaultDirectionTolerance ()
	Access the global tolerance to determine congruent spaces. More...

static void	SetGlobalDefaultDirectionTolerance (double)
	Access the global tolerance to determine congruent spaces. More...

Protected Member Functions inherited from itk::simple::ProcessObject
virtual unsigned long	AddITKObserver (const itk::EventObject &, itk::Command *)

virtual itk::ProcessObject *	GetActiveProcess ()

virtual void	OnActiveProcessDelete ()

virtual void	onCommandDelete (const itk::simple::Command *cmd) throw ()

virtual void	PreUpdate (itk::ProcessObject *p)

virtual void	RemoveITKObserver (EventCommand &e)

Protected Member Functions inherited from itk::simple::NonCopyable
	NonCopyable ()

Static Protected Member Functions inherited from itk::simple::ImageFilter< 1 >
static void	FixNonZeroIndex (TImageType *img)

Static Protected Member Functions inherited from itk::simple::ProcessObject
template<class TImageType >
static TImageType::ConstPointer	CastImageToITK (const Image &img)

template<class TImageType >
static Image	CastITKToImage (TImageType *img)

template<class TPixelType , unsigned int VImageDimension, unsigned int VLength, template< typename, unsigned int > class TVector>
static Image	CastITKToImage (itk::Image< TVector< TPixelType, VLength >, VImageDimension > *img)

static const itk::EventObject &	GetITKEventObject (EventEnum e)

template<typename T >
static std::ostream &	ToStringHelper (std::ostream &os, const T &v)

static std::ostream &	ToStringHelper (std::ostream &os, const char &v)

static std::ostream &	ToStringHelper (std::ostream &os, const signed char &v)

static std::ostream &	ToStringHelper (std::ostream &os, const unsigned char &v)

Detailed Description

Converts a label image to a label map and valuates the shape attributes.

A convenient class that converts a label image to a label map and valuates the shape attribute at once.

This implementation was taken from the Insight Journal paper:

https://hdl.handle.net/1926/584 or http://www.insight-journal.org/browse/publication/176

Author: Gaetan Lehmann. Biologie du Developpement et de la Reproduction, INRA de Jouy-en-Josas, France.

See also: ShapeLabelObject , LabelShapeOpeningImageFilter , LabelStatisticsOpeningImageFilter

Wiki Examples:

All Examples

Convert an itk::Image consisting of labeled regions to a ShapeLabelMap

See also: itk::LabelImageToShapeLabelMapFilter for the Doxygen on the original ITK class.

Definition at line 56 of file sitkLabelShapeStatisticsImageFilter.h.

Member Typedef Documentation

typedef void(Self::* itk::simple::LabelShapeStatisticsImageFilter::MemberFunctionType) (const Image &image1)

private

Setup for member function dispatching

Definition at line 296 of file sitkLabelShapeStatisticsImageFilter.h.

typedef IntegerPixelIDTypeList itk::simple::LabelShapeStatisticsImageFilter::PixelIDTypeList

Define the pixels types supported by this filter

Definition at line 68 of file sitkLabelShapeStatisticsImageFilter.h.

typedef LabelShapeStatisticsImageFilter itk::simple::LabelShapeStatisticsImageFilter::Self

Definition at line 58 of file sitkLabelShapeStatisticsImageFilter.h.

Constructor & Destructor Documentation

itk::simple::LabelShapeStatisticsImageFilter::LabelShapeStatisticsImageFilter ( )

Default Constructor that takes no arguments and initializes default parameters

itk::simple::LabelShapeStatisticsImageFilter::~LabelShapeStatisticsImageFilter ( )

Destructor

Member Function Documentation

Self& itk::simple::LabelShapeStatisticsImageFilter::ComputeFeretDiameterOff ( )

inline

Definition at line 89 of file sitkLabelShapeStatisticsImageFilter.h.

Self& itk::simple::LabelShapeStatisticsImageFilter::ComputeFeretDiameterOn ( )

inline

Set the value of ComputeFeretDiameter to true or false respectfully.

Definition at line 88 of file sitkLabelShapeStatisticsImageFilter.h.

Self& itk::simple::LabelShapeStatisticsImageFilter::ComputePerimeterOff ( )

inline

Definition at line 103 of file sitkLabelShapeStatisticsImageFilter.h.

Self& itk::simple::LabelShapeStatisticsImageFilter::ComputePerimeterOn ( )

inline

Set the value of ComputePerimeter to true or false respectfully.

Definition at line 102 of file sitkLabelShapeStatisticsImageFilter.h.

void itk::simple::LabelShapeStatisticsImageFilter::Execute ( const Image & image1 )

Execute the filter on the input image

void itk::simple::LabelShapeStatisticsImageFilter::Execute	(	const Image &	image1,
		double	backgroundValue,
		bool	computeFeretDiameter,
		bool	computePerimeter
	)

Execute the filter on the input image with the given parameters

template<class TImageType >

void itk::simple::LabelShapeStatisticsImageFilter::ExecuteInternal ( const Image & image1 )

private

double itk::simple::LabelShapeStatisticsImageFilter::GetBackgroundValue ( ) const

inline

Set/Get the value used as "background" in the output image. Defaults to NumericTraits<PixelType>::NonpositiveMin() .

Definition at line 80 of file sitkLabelShapeStatisticsImageFilter.h.

std::vector<unsigned int> itk::simple::LabelShapeStatisticsImageFilter::GetBoundingBox ( int64_t label ) const

inline

This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.

Definition at line 116 of file sitkLabelShapeStatisticsImageFilter.h.

std::vector<double> itk::simple::LabelShapeStatisticsImageFilter::GetCentroid ( int64_t label ) const

inline

This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.

Definition at line 125 of file sitkLabelShapeStatisticsImageFilter.h.

bool itk::simple::LabelShapeStatisticsImageFilter::GetComputeFeretDiameter ( ) const

inline

Set/Get whether the maximum Feret diameter should be computed or not. Default value is false, because of the high computation time required.

Definition at line 94 of file sitkLabelShapeStatisticsImageFilter.h.

bool itk::simple::LabelShapeStatisticsImageFilter::GetComputePerimeter ( ) const

inline

Set/Get whether the perimeter should be computed or not. Default value is false, because of the high computation time required.

Definition at line 108 of file sitkLabelShapeStatisticsImageFilter.h.

double itk::simple::LabelShapeStatisticsImageFilter::GetElongation ( int64_t label ) const

inline

This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.

Definition at line 134 of file sitkLabelShapeStatisticsImageFilter.h.

std::vector<double> itk::simple::LabelShapeStatisticsImageFilter::GetEquivalentEllipsoidDiameter ( int64_t label ) const

inline

This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.

Definition at line 143 of file sitkLabelShapeStatisticsImageFilter.h.

double itk::simple::LabelShapeStatisticsImageFilter::GetEquivalentSphericalPerimeter ( int64_t label ) const

inline

This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.

Definition at line 152 of file sitkLabelShapeStatisticsImageFilter.h.

double itk::simple::LabelShapeStatisticsImageFilter::GetEquivalentSphericalRadius ( int64_t label ) const

inline

This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.

Definition at line 161 of file sitkLabelShapeStatisticsImageFilter.h.

double itk::simple::LabelShapeStatisticsImageFilter::GetFeretDiameter ( int64_t label ) const

inline

This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.

Definition at line 170 of file sitkLabelShapeStatisticsImageFilter.h.

double itk::simple::LabelShapeStatisticsImageFilter::GetFlatness ( int64_t label ) const

inline

This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.

Definition at line 179 of file sitkLabelShapeStatisticsImageFilter.h.

std::vector<int64_t> itk::simple::LabelShapeStatisticsImageFilter::GetLabels ( ) const

inline

This is a measurement. Its value is updated in the Execute methods, so the value will only be valid after an execution.

Definition at line 187 of file sitkLabelShapeStatisticsImageFilter.h.

std::string itk::simple::LabelShapeStatisticsImageFilter::GetName ( ) const

inlinevirtual

Name of this class

Implements itk::simple::ProcessObject.

Definition at line 271 of file sitkLabelShapeStatisticsImageFilter.h.

uint64_t itk::simple::LabelShapeStatisticsImageFilter::GetNumberOfLabels ( )

Return the number of labels after execution.

uint64_t itk::simple::LabelShapeStatisticsImageFilter::GetNumberOfPixels ( int64_t label ) const

inline

This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.

Definition at line 196 of file sitkLabelShapeStatisticsImageFilter.h.

uint64_t itk::simple::LabelShapeStatisticsImageFilter::GetNumberOfPixelsOnBorder ( int64_t label ) const

inline

This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.

Definition at line 205 of file sitkLabelShapeStatisticsImageFilter.h.

double itk::simple::LabelShapeStatisticsImageFilter::GetPerimeter ( int64_t label ) const

inline

This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.

Definition at line 214 of file sitkLabelShapeStatisticsImageFilter.h.

double itk::simple::LabelShapeStatisticsImageFilter::GetPerimeterOnBorder ( int64_t label ) const

inline

This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.

Definition at line 223 of file sitkLabelShapeStatisticsImageFilter.h.

double itk::simple::LabelShapeStatisticsImageFilter::GetPerimeterOnBorderRatio ( int64_t label ) const

inline

This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.

Definition at line 232 of file sitkLabelShapeStatisticsImageFilter.h.

double itk::simple::LabelShapeStatisticsImageFilter::GetPhysicalSize ( int64_t label ) const

inline

This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.

Definition at line 241 of file sitkLabelShapeStatisticsImageFilter.h.

std::vector<double> itk::simple::LabelShapeStatisticsImageFilter::GetPrincipalAxes ( int64_t label ) const

inline

This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.

Definition at line 250 of file sitkLabelShapeStatisticsImageFilter.h.

std::vector<double> itk::simple::LabelShapeStatisticsImageFilter::GetPrincipalMoments ( int64_t label ) const

inline

This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.

Definition at line 259 of file sitkLabelShapeStatisticsImageFilter.h.

double itk::simple::LabelShapeStatisticsImageFilter::GetRoundness ( int64_t label ) const

inline

This is an active measurement. It may be accessed while the filter is being executing in command call-backs and can be accessed after execution.

Definition at line 268 of file sitkLabelShapeStatisticsImageFilter.h.

double itk::simple::LabelShapeStatisticsImageFilter::HasLabel ( int64_t label )

Does the specified label exist? Can only be called after a call a call to Update().

Self& itk::simple::LabelShapeStatisticsImageFilter::SetBackgroundValue ( double BackgroundValue )

inline

Set/Get the value used as "background" in the output image. Defaults to NumericTraits<PixelType>::NonpositiveMin() .

Definition at line 75 of file sitkLabelShapeStatisticsImageFilter.h.

Self& itk::simple::LabelShapeStatisticsImageFilter::SetComputeFeretDiameter ( bool ComputeFeretDiameter )

inline

Set/Get whether the maximum Feret diameter should be computed or not. Default value is false, because of the high computation time required.

Definition at line 85 of file sitkLabelShapeStatisticsImageFilter.h.

Self& itk::simple::LabelShapeStatisticsImageFilter::SetComputePerimeter ( bool ComputePerimeter )

inline

Set/Get whether the perimeter should be computed or not. Default value is false, because of the high computation time required.

Definition at line 99 of file sitkLabelShapeStatisticsImageFilter.h.

std::string itk::simple::LabelShapeStatisticsImageFilter::ToString ( ) const

virtual

Print ourselves out

Reimplemented from itk::simple::ProcessObject.

Friends And Related Function Documentation

friend struct detail::MemberFunctionAddressor< MemberFunctionType >

friend

Definition at line 301 of file sitkLabelShapeStatisticsImageFilter.h.

Member Data Documentation

double itk::simple::LabelShapeStatisticsImageFilter::m_BackgroundValue

private

Definition at line 307 of file sitkLabelShapeStatisticsImageFilter.h.

bool itk::simple::LabelShapeStatisticsImageFilter::m_ComputeFeretDiameter

private

Definition at line 308 of file sitkLabelShapeStatisticsImageFilter.h.

bool itk::simple::LabelShapeStatisticsImageFilter::m_ComputePerimeter

private

Definition at line 309 of file sitkLabelShapeStatisticsImageFilter.h.

itk::ProcessObject* itk::simple::LabelShapeStatisticsImageFilter::m_Filter

private

Definition at line 348 of file sitkLabelShapeStatisticsImageFilter.h.

std::vector<int64_t> itk::simple::LabelShapeStatisticsImageFilter::m_Labels

private

Definition at line 327 of file sitkLabelShapeStatisticsImageFilter.h.

nsstd::auto_ptr<detail::MemberFunctionFactory<MemberFunctionType> > itk::simple::LabelShapeStatisticsImageFilter::m_MemberFactory

private

Definition at line 303 of file sitkLabelShapeStatisticsImageFilter.h.

nsstd::function<std::vector<unsigned int>int64_t)> itk::simple::LabelShapeStatisticsImageFilter::m_pfGetBoundingBox

private

Definition at line 311 of file sitkLabelShapeStatisticsImageFilter.h.

nsstd::function<std::vector<double>int64_t)> itk::simple::LabelShapeStatisticsImageFilter::m_pfGetCentroid

private

Definition at line 313 of file sitkLabelShapeStatisticsImageFilter.h.

nsstd::function<double(int64_t)> itk::simple::LabelShapeStatisticsImageFilter::m_pfGetElongation

private

Definition at line 315 of file sitkLabelShapeStatisticsImageFilter.h.

nsstd::function<std::vector<double>int64_t)> itk::simple::LabelShapeStatisticsImageFilter::m_pfGetEquivalentEllipsoidDiameter

private

Definition at line 317 of file sitkLabelShapeStatisticsImageFilter.h.

nsstd::function<double(int64_t)> itk::simple::LabelShapeStatisticsImageFilter::m_pfGetEquivalentSphericalPerimeter

private

Definition at line 319 of file sitkLabelShapeStatisticsImageFilter.h.

nsstd::function<double(int64_t)> itk::simple::LabelShapeStatisticsImageFilter::m_pfGetEquivalentSphericalRadius

private

Definition at line 321 of file sitkLabelShapeStatisticsImageFilter.h.

nsstd::function<double(int64_t)> itk::simple::LabelShapeStatisticsImageFilter::m_pfGetFeretDiameter

private

Definition at line 323 of file sitkLabelShapeStatisticsImageFilter.h.

nsstd::function<double(int64_t)> itk::simple::LabelShapeStatisticsImageFilter::m_pfGetFlatness

private

Definition at line 325 of file sitkLabelShapeStatisticsImageFilter.h.

nsstd::function<uint64_t(int64_t)> itk::simple::LabelShapeStatisticsImageFilter::m_pfGetNumberOfPixels

private

Definition at line 329 of file sitkLabelShapeStatisticsImageFilter.h.

nsstd::function<uint64_t(int64_t)> itk::simple::LabelShapeStatisticsImageFilter::m_pfGetNumberOfPixelsOnBorder

private

Definition at line 331 of file sitkLabelShapeStatisticsImageFilter.h.

nsstd::function<double(int64_t)> itk::simple::LabelShapeStatisticsImageFilter::m_pfGetPerimeter

private

Definition at line 333 of file sitkLabelShapeStatisticsImageFilter.h.

nsstd::function<double(int64_t)> itk::simple::LabelShapeStatisticsImageFilter::m_pfGetPerimeterOnBorder

private

Definition at line 335 of file sitkLabelShapeStatisticsImageFilter.h.

nsstd::function<double(int64_t)> itk::simple::LabelShapeStatisticsImageFilter::m_pfGetPerimeterOnBorderRatio

private

Definition at line 337 of file sitkLabelShapeStatisticsImageFilter.h.

nsstd::function<double(int64_t)> itk::simple::LabelShapeStatisticsImageFilter::m_pfGetPhysicalSize

private

Definition at line 339 of file sitkLabelShapeStatisticsImageFilter.h.

nsstd::function<std::vector<double>int64_t)> itk::simple::LabelShapeStatisticsImageFilter::m_pfGetPrincipalAxes

private

Definition at line 341 of file sitkLabelShapeStatisticsImageFilter.h.

nsstd::function<std::vector<double>int64_t)> itk::simple::LabelShapeStatisticsImageFilter::m_pfGetPrincipalMoments

private

Definition at line 343 of file sitkLabelShapeStatisticsImageFilter.h.

nsstd::function<double(int64_t)> itk::simple::LabelShapeStatisticsImageFilter::m_pfGetRoundness

private

Definition at line 345 of file sitkLabelShapeStatisticsImageFilter.h.

The documentation for this class was generated from the following file:

sitkLabelShapeStatisticsImageFilter.h

Public Types

Public Member Functions

Private Types

Private Member Functions

Private Attributes

Friends

Additional Inherited Members

Detailed Description

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Friends And Related Function Documentation

Member Data Documentation