SimpleITK  2.1.0.dev79
Public Types | Public Member Functions | Private Types | Private Member Functions | Private Attributes | Friends | List of all members
itk::simple::RichardsonLucyDeconvolutionImageFilter Class Reference

Deconvolve an image using the Richardson-Lucy deconvolution algorithm. More...

#include <sitkRichardsonLucyDeconvolutionImageFilter.h>

+ Inheritance diagram for itk::simple::RichardsonLucyDeconvolutionImageFilter:
+ Collaboration diagram for itk::simple::RichardsonLucyDeconvolutionImageFilter:

Public Types

enum  BoundaryConditionType {
  ZERO_PAD,
  ZERO_FLUX_NEUMANN_PAD,
  PERIODIC_PAD
}
 
enum  OutputRegionModeType {
  SAME,
  VALID
}
 
using PixelIDTypeList = BasicPixelIDTypeList
 
using Self = RichardsonLucyDeconvolutionImageFilter
 
- Public Types inherited from itk::simple::ImageFilter
using Self = ImageFilter
 
- Public Types inherited from itk::simple::ProcessObject
using Self = ProcessObject
 

Public Member Functions

Image Execute (const Image &image1, const Image &image2)
 
BoundaryConditionType GetBoundaryCondition () const
 
std::string GetName () const
 
bool GetNormalize () const
 
int GetNumberOfIterations () const
 
OutputRegionModeType GetOutputRegionMode () const
 
SelfNormalizeOff ()
 
SelfNormalizeOn ()
 
 RichardsonLucyDeconvolutionImageFilter ()
 
SelfSetBoundaryCondition (BoundaryConditionType BoundaryCondition)
 
SelfSetNormalize (bool Normalize)
 
SelfSetNumberOfIterations (int NumberOfIterations)
 
SelfSetOutputRegionMode (OutputRegionModeType OutputRegionMode)
 
std::string ToString () const
 
virtual ~RichardsonLucyDeconvolutionImageFilter ()
 
- Public Member Functions inherited from itk::simple::ImageFilter
 ImageFilter ()
 
virtual ~ImageFilter ()=0
 
- Public Member Functions inherited from itk::simple::ProcessObject
virtual void Abort ()
 
virtual int AddCommand (itk::simple::EventEnum event, const std::function< void()> &func)
 Directly add a callback to observe an event. More...
 
virtual int AddCommand (itk::simple::EventEnum event, itk::simple::Command &cmd)
 Add a Command Object to observer the event. More...
 
virtual float GetProgress () const
 An Active Measurement of the progress of execution. More...
 
virtual bool HasCommand (itk::simple::EventEnum event) const
 Query of this object has any registered commands for event. More...
 
 ProcessObject ()
 
virtual void RemoveAllCommands ()
 Remove all registered commands. More...
 
virtual ~ProcessObject ()
 
virtual void DebugOn ()
 
virtual void DebugOff ()
 
virtual bool GetDebug () const
 
virtual void SetDebug (bool debugFlag)
 
virtual void SetNumberOfThreads (unsigned int n)
 
virtual unsigned int GetNumberOfThreads () const
 
virtual void SetNumberOfWorkUnits (unsigned int n)
 
virtual unsigned int GetNumberOfWorkUnits () const
 

Private Types

using MemberFunctionType = Image(Self::*)(const Image &image1, const Image &image2)
 

Private Member Functions

template<class TImageType >
Image ExecuteInternal (const Image &image1, const Image &image2)
 

Private Attributes

BoundaryConditionType m_BoundaryCondition {itk::simple::RichardsonLucyDeconvolutionImageFilter::ZERO_FLUX_NEUMANN_PAD}
 
std::unique_ptr< detail::MemberFunctionFactory< MemberFunctionType > > m_MemberFactory
 
bool m_Normalize {false}
 
int m_NumberOfIterations {1}
 
OutputRegionModeType m_OutputRegionMode {itk::simple::RichardsonLucyDeconvolutionImageFilter::SAME}
 

Friends

struct detail::MemberFunctionAddressor< MemberFunctionType >
 

Additional Inherited Members

- Static Public Member Functions inherited from itk::simple::ProcessObject
static bool GetGlobalDefaultDebug ()
 
static void GlobalDefaultDebugOff ()
 
static void GlobalDefaultDebugOn ()
 
static void SetGlobalDefaultDebug (bool debugFlag)
 
static void GlobalWarningDisplayOn ()
 
static void GlobalWarningDisplayOff ()
 
static void SetGlobalWarningDisplay (bool flag)
 
static bool GetGlobalWarningDisplay ()
 
static double GetGlobalDefaultCoordinateTolerance ()
 Access the global tolerance to determine congruent spaces. More...
 
static void SetGlobalDefaultCoordinateTolerance (double)
 Access the global tolerance to determine congruent spaces. More...
 
static double GetGlobalDefaultDirectionTolerance ()
 Access the global tolerance to determine congruent spaces. More...
 
static void SetGlobalDefaultDirectionTolerance (double)
 Access the global tolerance to determine congruent spaces. More...
 
static bool SetGlobalDefaultThreader (const std::string &threader)
 Set/Get the default threader used for process objects. More...
 
static std::string GetGlobalDefaultThreader ()
 Set/Get the default threader used for process objects. More...
 
static void SetGlobalDefaultNumberOfThreads (unsigned int n)
 
static unsigned int GetGlobalDefaultNumberOfThreads ()
 Set/Get the default threader used for process objects. More...
 
- Protected Member Functions inherited from itk::simple::ImageFilter
void CheckImageMatchingDimension (const Image &image1, const Image &image2, const std::string &image2Name)
 
void CheckImageMatchingPixelType (const Image &image1, const Image &image2, const std::string &image2Name)
 
void CheckImageMatchingSize (const Image &image1, const Image &image2, const std::string &image2Name)
 
- Protected Member Functions inherited from itk::simple::ProcessObject
virtual unsigned long AddITKObserver (const itk::EventObject &, itk::Command *)
 
virtual itk::ProcessObjectGetActiveProcess ()
 
virtual void OnActiveProcessDelete ()
 
virtual void onCommandDelete (const itk::simple::Command *cmd) noexcept
 
virtual void PreUpdate (itk::ProcessObject *p)
 
virtual void RemoveITKObserver (EventCommand &e)
 
- Protected Member Functions inherited from itk::simple::NonCopyable
 NonCopyable ()=default
 
 NonCopyable (const NonCopyable &)=delete
 
NonCopyableoperator= (const NonCopyable &)=delete
 
- Static Protected Member Functions inherited from itk::simple::ImageFilter
template<class TImageType >
static void FixNonZeroIndex (TImageType *img)
 
- Static Protected Member Functions inherited from itk::simple::ProcessObject
template<class TImageType >
static TImageType::ConstPointer CastImageToITK (const Image &img)
 
template<class TPixelType , unsigned int VImageDimension, unsigned int VLength, template< typename, unsigned int > class TVector>
static Image CastITKToImage (itk::Image< TVector< TPixelType, VLength >, VImageDimension > *img)
 
template<class TImageType >
static Image CastITKToImage (TImageType *img)
 
static const itk::EventObjectGetITKEventObject (EventEnum e)
 
template<typename T >
static std::ostream & ToStringHelper (std::ostream &os, const T &v)
 
static std::ostream & ToStringHelper (std::ostream &os, const char &v)
 
static std::ostream & ToStringHelper (std::ostream &os, const signed char &v)
 
static std::ostream & ToStringHelper (std::ostream &os, const unsigned char &v)
 

Detailed Description

Deconvolve an image using the Richardson-Lucy deconvolution algorithm.

This filter implements the Richardson-Lucy deconvolution algorithm as defined in Bertero M and Boccacci P, "Introduction to Inverse Problems in Imaging", 1998. The algorithm assumes that the input image has been formed by a linear shift-invariant system with a known kernel.

The Richardson-Lucy algorithm assumes that noise in the image follows a Poisson distribution and that the distribution for each pixel is independent of the other pixels.

This code was adapted from the Insight Journal contribution:

"Deconvolution: infrastructure and reference algorithms" by Gaetan Lehmann https://hdl.handle.net/10380/3207

Author
Gaetan Lehmann, Biologie du Developpement et de la Reproduction, INRA de Jouy-en-Josas, France
Cory Quammen, The University of North Carolina at Chapel Hill
See also
IterativeDeconvolutionImageFilter
LandweberDeconvolutionImageFilter
ProjectedLandweberDeconvolutionImageFilter
itk::simple::RichardsonLucyDeconvolution for the procedural interface
itk::RichardsonLucyDeconvolutionImageFilter for the Doxygen on the original ITK class.

Definition at line 63 of file sitkRichardsonLucyDeconvolutionImageFilter.h.

Member Typedef Documentation

◆ MemberFunctionType

using itk::simple::RichardsonLucyDeconvolutionImageFilter::MemberFunctionType = Image (Self::*)( const Image& image1, const Image& image2 )
private

Setup for member function dispatching

Definition at line 137 of file sitkRichardsonLucyDeconvolutionImageFilter.h.

◆ PixelIDTypeList

Define the pixels types supported by this filter

Definition at line 75 of file sitkRichardsonLucyDeconvolutionImageFilter.h.

◆ Self

Definition at line 65 of file sitkRichardsonLucyDeconvolutionImageFilter.h.

Member Enumeration Documentation

◆ BoundaryConditionType

Enumerator
ZERO_PAD 
ZERO_FLUX_NEUMANN_PAD 
PERIODIC_PAD 

Definition at line 102 of file sitkRichardsonLucyDeconvolutionImageFilter.h.

◆ OutputRegionModeType

Enumerator
SAME 
VALID 

Definition at line 112 of file sitkRichardsonLucyDeconvolutionImageFilter.h.

Constructor & Destructor Documentation

◆ ~RichardsonLucyDeconvolutionImageFilter()

virtual itk::simple::RichardsonLucyDeconvolutionImageFilter::~RichardsonLucyDeconvolutionImageFilter ( )
virtual

Destructor

◆ RichardsonLucyDeconvolutionImageFilter()

itk::simple::RichardsonLucyDeconvolutionImageFilter::RichardsonLucyDeconvolutionImageFilter ( )

Default Constructor that takes no arguments and initializes default parameters

Member Function Documentation

◆ Execute()

Image itk::simple::RichardsonLucyDeconvolutionImageFilter::Execute ( const Image image1,
const Image image2 
)

Execute the filter on the input images

◆ ExecuteInternal()

template<class TImageType >
Image itk::simple::RichardsonLucyDeconvolutionImageFilter::ExecuteInternal ( const Image image1,
const Image image2 
)
private

◆ GetBoundaryCondition()

BoundaryConditionType itk::simple::RichardsonLucyDeconvolutionImageFilter::GetBoundaryCondition ( ) const
inline

◆ GetName()

std::string itk::simple::RichardsonLucyDeconvolutionImageFilter::GetName ( ) const
inlinevirtual

Name of this class

Implements itk::simple::ProcessObject.

Definition at line 123 of file sitkRichardsonLucyDeconvolutionImageFilter.h.

◆ GetNormalize()

bool itk::simple::RichardsonLucyDeconvolutionImageFilter::GetNormalize ( ) const
inline

◆ GetNumberOfIterations()

int itk::simple::RichardsonLucyDeconvolutionImageFilter::GetNumberOfIterations ( ) const
inline

Get the number of iterations.

Definition at line 86 of file sitkRichardsonLucyDeconvolutionImageFilter.h.

◆ GetOutputRegionMode()

OutputRegionModeType itk::simple::RichardsonLucyDeconvolutionImageFilter::GetOutputRegionMode ( ) const
inline

◆ NormalizeOff()

Self& itk::simple::RichardsonLucyDeconvolutionImageFilter::NormalizeOff ( )
inline

Definition at line 96 of file sitkRichardsonLucyDeconvolutionImageFilter.h.

◆ NormalizeOn()

Self& itk::simple::RichardsonLucyDeconvolutionImageFilter::NormalizeOn ( )
inline

Set the value of Normalize to true or false respectfully.

Definition at line 95 of file sitkRichardsonLucyDeconvolutionImageFilter.h.

◆ SetBoundaryCondition()

Self& itk::simple::RichardsonLucyDeconvolutionImageFilter::SetBoundaryCondition ( BoundaryConditionType  BoundaryCondition)
inline

◆ SetNormalize()

Self& itk::simple::RichardsonLucyDeconvolutionImageFilter::SetNormalize ( bool  Normalize)
inline

Normalize the output image by the sum of the kernel components

Definition at line 92 of file sitkRichardsonLucyDeconvolutionImageFilter.h.

References itk::simple::Normalize().

◆ SetNumberOfIterations()

Self& itk::simple::RichardsonLucyDeconvolutionImageFilter::SetNumberOfIterations ( int  NumberOfIterations)
inline

Set the number of iterations.

Definition at line 81 of file sitkRichardsonLucyDeconvolutionImageFilter.h.

◆ SetOutputRegionMode()

Self& itk::simple::RichardsonLucyDeconvolutionImageFilter::SetOutputRegionMode ( OutputRegionModeType  OutputRegionMode)
inline

◆ ToString()

std::string itk::simple::RichardsonLucyDeconvolutionImageFilter::ToString ( ) const
virtual

Print ourselves out

Reimplemented from itk::simple::ProcessObject.

Friends And Related Function Documentation

◆ detail::MemberFunctionAddressor< MemberFunctionType >

Member Data Documentation

◆ m_BoundaryCondition

BoundaryConditionType itk::simple::RichardsonLucyDeconvolutionImageFilter::m_BoundaryCondition {itk::simple::RichardsonLucyDeconvolutionImageFilter::ZERO_FLUX_NEUMANN_PAD}
private

◆ m_MemberFactory

std::unique_ptr<detail::MemberFunctionFactory<MemberFunctionType> > itk::simple::RichardsonLucyDeconvolutionImageFilter::m_MemberFactory
private

◆ m_Normalize

bool itk::simple::RichardsonLucyDeconvolutionImageFilter::m_Normalize {false}
private

◆ m_NumberOfIterations

int itk::simple::RichardsonLucyDeconvolutionImageFilter::m_NumberOfIterations {1}
private

◆ m_OutputRegionMode

OutputRegionModeType itk::simple::RichardsonLucyDeconvolutionImageFilter::m_OutputRegionMode {itk::simple::RichardsonLucyDeconvolutionImageFilter::SAME}
private

The documentation for this class was generated from the following file: