Suppress local minima whose depth below the baseline is less than h. More...

#include <sitkHMinimaImageFilter.h>

Inheritance diagram for itk::simple::HMinimaImageFilter:

Collaboration diagram for itk::simple::HMinimaImageFilter:

Detailed Description

Suppress local minima whose depth below the baseline is less than h.

HMinimaImageFilter suppresses local minima that are less than h intensity units below the (local) background. This has the effect of smoothing over the "low" parts of the noise in the image without smoothing over large changes in intensity (region boundaries). See the HMaximaImageFilter to suppress the local maxima whose height is less than h intensity units above the (local) background.

If original image is subtracted from the output of HMinimaImageFilter , the significant "valleys" in the image can be identified. This is what the HConcaveImageFilter provides.

This filter uses the GrayscaleGeodesicErodeImageFilter . It provides its own input as the "mask" input to the geodesic dilation. The "marker" image for the geodesic dilation is the input image plus the height parameter h.

Geodesic morphology and the H-Minima algorithm is described in Chapter 6 of Pierre Soille's book "Morphological Image Analysis: Principles and Applications", Second Edition, Springer, 2003.

See also: GrayscaleGeodesicDilateImageFilter , HMinimaImageFilter , HConvexImageFilter; MorphologyImageFilter , GrayscaleDilateImageFilter , GrayscaleFunctionDilateImageFilter , BinaryDilateImageFilter; itk::simple::HMinima for the procedural interface; itk::HMinimaImageFilter for the Doxygen on the original ITK class.

Definition at line 53 of file sitkHMinimaImageFilter.h.

Public Types
using	PixelIDTypeList = BasicPixelIDTypeList

using	Self = HMinimaImageFilter

Public Types inherited from itk::simple::ImageFilter
using	Self = ImageFilter

Public Types inherited from itk::simple::ProcessObject
using	Self = ProcessObject

Public Member Functions
Image	Execute (const Image &image1)

Self &	FullyConnectedOff ()

Self &	FullyConnectedOn ()

bool	GetFullyConnected () const

double	GetHeight () const

std::string	GetName () const

	HMinimaImageFilter ()

Self &	SetFullyConnected (bool FullyConnected)

Self &	SetHeight (double Height)

std::string	ToString () const

virtual	~HMinimaImageFilter ()

Public Member Functions inherited from itk::simple::ImageFilter
	ImageFilter ()

virtual	~ImageFilter ()=0

Public Member Functions inherited from itk::simple::ProcessObject
virtual void	Abort ()

virtual int	AddCommand (itk::simple::EventEnum event, const std::function< void()> &func)
	Directly add a callback to observe an event. More...

virtual int	AddCommand (itk::simple::EventEnum event, itk::simple::Command &cmd)
	Add a Command Object to observer the event. More...

virtual float	GetProgress () const
	An Active Measurement of the progress of execution. More...

virtual bool	HasCommand (itk::simple::EventEnum event) const
	Query of this object has any registered commands for event. More...

	ProcessObject ()

virtual void	RemoveAllCommands ()
	Remove all registered commands. More...

virtual	~ProcessObject ()

virtual void	DebugOn ()

virtual void	DebugOff ()

virtual bool	GetDebug () const

virtual void	SetDebug (bool debugFlag)

virtual void	SetNumberOfThreads (unsigned int n)

virtual unsigned int	GetNumberOfThreads () const

virtual void	SetNumberOfWorkUnits (unsigned int n)

virtual unsigned int	GetNumberOfWorkUnits () const

Private Types
using	MemberFunctionType = Image(Self::*)(const Image &image1)

Private Member Functions
template<class TImageType >
Image	ExecuteInternal (const Image &image1)

Private Attributes
bool	m_FullyConnected {false}

double	m_Height {2.0}

std::unique_ptr< detail::MemberFunctionFactory< MemberFunctionType > >	m_MemberFactory

Friends
struct	detail::MemberFunctionAddressor< MemberFunctionType >

Additional Inherited Members
Static Public Member Functions inherited from itk::simple::ProcessObject
static bool	GetGlobalDefaultDebug ()

static void	GlobalDefaultDebugOff ()

static void	GlobalDefaultDebugOn ()

static void	SetGlobalDefaultDebug (bool debugFlag)

static void	GlobalWarningDisplayOn ()

static void	GlobalWarningDisplayOff ()

static void	SetGlobalWarningDisplay (bool flag)

static bool	GetGlobalWarningDisplay ()

static double	GetGlobalDefaultCoordinateTolerance ()
	Access the global tolerance to determine congruent spaces. More...

static void	SetGlobalDefaultCoordinateTolerance (double)
	Access the global tolerance to determine congruent spaces. More...

static double	GetGlobalDefaultDirectionTolerance ()
	Access the global tolerance to determine congruent spaces. More...

static void	SetGlobalDefaultDirectionTolerance (double)
	Access the global tolerance to determine congruent spaces. More...

static bool	SetGlobalDefaultThreader (const std::string &threader)
	Set/Get the default threader used for process objects. More...

static std::string	GetGlobalDefaultThreader ()
	Set/Get the default threader used for process objects. More...

static void	SetGlobalDefaultNumberOfThreads (unsigned int n)

static unsigned int	GetGlobalDefaultNumberOfThreads ()
	Set/Get the default threader used for process objects. More...

Protected Member Functions inherited from itk::simple::ImageFilter
void	CheckImageMatchingDimension (const Image &image1, const Image &image2, const std::string &image2Name)

void	CheckImageMatchingPixelType (const Image &image1, const Image &image2, const std::string &image2Name)

void	CheckImageMatchingSize (const Image &image1, const Image &image2, const std::string &image2Name)

Protected Member Functions inherited from itk::simple::ProcessObject
virtual unsigned long	AddITKObserver (const itk::EventObject &, itk::Command *)

virtual itk::ProcessObject *	GetActiveProcess ()

virtual void	OnActiveProcessDelete ()

virtual void	onCommandDelete (const itk::simple::Command *cmd) noexcept

virtual void	PreUpdate (itk::ProcessObject *p)

virtual void	RemoveITKObserver (EventCommand &e)

Protected Member Functions inherited from itk::simple::NonCopyable
	NonCopyable ()=default

	NonCopyable (const NonCopyable &)=delete

NonCopyable &	operator= (const NonCopyable &)=delete

Static Protected Member Functions inherited from itk::simple::ImageFilter
template<class TImageType >
static void	FixNonZeroIndex (TImageType *img)

Static Protected Member Functions inherited from itk::simple::ProcessObject
template<class TImageType >
static TImageType::ConstPointer	CastImageToITK (const Image &img)

template<class TPixelType , unsigned int VImageDimension, unsigned int VLength, template< typename, unsigned int > class TVector>
static Image	CastITKToImage (itk::Image< TVector< TPixelType, VLength >, VImageDimension > *img)

template<unsigned int VImageDimension, unsigned int VLength, template< unsigned int > class TVector>
static Image	CastITKToImage (itk::Image< TVector< VLength >, VImageDimension > *img)

template<class TImageType >
static Image	CastITKToImage (TImageType *img)

static const itk::EventObject &	GetITKEventObject (EventEnum e)

template<typename T >
static std::ostream &	ToStringHelper (std::ostream &os, const T &v)

static std::ostream &	ToStringHelper (std::ostream &os, const char &v)

static std::ostream &	ToStringHelper (std::ostream &os, const signed char &v)

static std::ostream &	ToStringHelper (std::ostream &os, const unsigned char &v)

Member Typedef Documentation

◆ MemberFunctionType

using itk::simple::HMinimaImageFilter::MemberFunctionType = Image (Self::*)( const Image& image1 )

private

Setup for member function dispatching

Definition at line 107 of file sitkHMinimaImageFilter.h.

◆ PixelIDTypeList

using itk::simple::HMinimaImageFilter::PixelIDTypeList = BasicPixelIDTypeList

Define the pixels types supported by this filter

Definition at line 65 of file sitkHMinimaImageFilter.h.

◆ Self

using itk::simple::HMinimaImageFilter::Self = HMinimaImageFilter

Definition at line 55 of file sitkHMinimaImageFilter.h.

Constructor & Destructor Documentation

◆ ~HMinimaImageFilter()

virtual itk::simple::HMinimaImageFilter::~HMinimaImageFilter ( )

virtual

Destructor

◆ HMinimaImageFilter()

itk::simple::HMinimaImageFilter::HMinimaImageFilter ( )

Default Constructor that takes no arguments and initializes default parameters

Member Function Documentation

◆ Execute()

Image itk::simple::HMinimaImageFilter::Execute ( const Image & image1 )

Execute the filter on the input image

◆ ExecuteInternal()

template<class TImageType >

Image itk::simple::HMinimaImageFilter::ExecuteInternal ( const Image & image1 )

private

◆ FullyConnectedOff()

Self& itk::simple::HMinimaImageFilter::FullyConnectedOff ( )

inline

Definition at line 85 of file sitkHMinimaImageFilter.h.

◆ FullyConnectedOn()

Self& itk::simple::HMinimaImageFilter::FullyConnectedOn ( )

inline

Set the value of FullyConnected to true or false respectfully.

Definition at line 84 of file sitkHMinimaImageFilter.h.

◆ GetFullyConnected()

bool itk::simple::HMinimaImageFilter::GetFullyConnected ( ) const

inline

Set/Get whether the connected components are defined strictly by face connectivity or by face+edge+vertex connectivity. Default is FullyConnectedOff. For objects that are 1 pixel wide, use FullyConnectedOn.

Definition at line 90 of file sitkHMinimaImageFilter.h.

◆ GetHeight()

double itk::simple::HMinimaImageFilter::GetHeight ( ) const

inline

Set/Get the height that a local maximum must be above the local background (local contrast) in order to survive the processing. Local maxima below this value are replaced with an estimate of the local background.

Definition at line 76 of file sitkHMinimaImageFilter.h.

◆ GetName()

std::string itk::simple::HMinimaImageFilter::GetName ( ) const

inlinevirtual

Name of this class

Implements itk::simple::ProcessObject.

Definition at line 93 of file sitkHMinimaImageFilter.h.

◆ SetFullyConnected()

Self& itk::simple::HMinimaImageFilter::SetFullyConnected ( bool FullyConnected )

inline

Set/Get whether the connected components are defined strictly by face connectivity or by face+edge+vertex connectivity. Default is FullyConnectedOff. For objects that are 1 pixel wide, use FullyConnectedOn.

Definition at line 81 of file sitkHMinimaImageFilter.h.

◆ SetHeight()

Self& itk::simple::HMinimaImageFilter::SetHeight ( double Height )

inline

Set/Get the height that a local maximum must be above the local background (local contrast) in order to survive the processing. Local maxima below this value are replaced with an estimate of the local background.

Definition at line 71 of file sitkHMinimaImageFilter.h.

◆ ToString()

std::string itk::simple::HMinimaImageFilter::ToString ( ) const

virtual

Print ourselves out

Reimplemented from itk::simple::ProcessObject.

Friends And Related Function Documentation

◆ detail::MemberFunctionAddressor< MemberFunctionType >

friend struct detail::MemberFunctionAddressor< MemberFunctionType >

friend

Definition at line 111 of file sitkHMinimaImageFilter.h.

Member Data Documentation

◆ m_FullyConnected

bool itk::simple::HMinimaImageFilter::m_FullyConnected {false}

private

Definition at line 119 of file sitkHMinimaImageFilter.h.

◆ m_Height

double itk::simple::HMinimaImageFilter::m_Height {2.0}

private

Definition at line 116 of file sitkHMinimaImageFilter.h.

◆ m_MemberFactory

std::unique_ptr<detail::MemberFunctionFactory<MemberFunctionType> > itk::simple::HMinimaImageFilter::m_MemberFactory

private

Definition at line 113 of file sitkHMinimaImageFilter.h.

The documentation for this class was generated from the following file:

sitkHMinimaImageFilter.h

Detailed Description

Public Types

Public Member Functions

Private Types

Private Member Functions

Private Attributes

Friends

Additional Inherited Members

Member Typedef Documentation

◆ MemberFunctionType

◆ PixelIDTypeList

◆ Self

Constructor & Destructor Documentation

◆ ~HMinimaImageFilter()

◆ HMinimaImageFilter()

Member Function Documentation

◆ Execute()

◆ ExecuteInternal()

◆ FullyConnectedOff()

◆ FullyConnectedOn()

◆ GetFullyConnected()

◆ GetHeight()

◆ GetName()

◆ SetFullyConnected()

◆ SetHeight()

◆ ToString()

Friends And Related Function Documentation

◆ detail::MemberFunctionAddressor< MemberFunctionType >

Member Data Documentation

◆ m_FullyConnected

◆ m_Height

◆ m_MemberFactory