sitkAdditionalProcedures.h

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/*=========================================================================
*
*  Copyright Insight Software Consortium
*
*  Licensed under the Apache License, Version 2.0 (the "License");
*  you may not use this file except in compliance with the License.
*  You may obtain a copy of the License at
*
*         http://www.apache.org/licenses/LICENSE-2.0.txt
*
*  Unless required by applicable law or agreed to in writing, software
*  distributed under the License is distributed on an "AS IS" BASIS,
*  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
*  See the License for the specific language governing permissions and
*  limitations under the License.
*
*=========================================================================*/
#ifndef sitkAdditionalProcedures_h
#define sitkAdditionalProcedures_h


#include "sitkBasicFilters.h"
#include "sitkImage.h"
#include "sitkTransform.h"
#include "sitkInterpolator.h"
#include "sitkPatchBasedDenoisingImageFilter.h"

namespace itk {
namespace simple {


SITKBasicFilters_EXPORT Image Resample ( const Image& image1,
                                         Transform transform = itk::simple::Transform(),
                                         InterpolatorEnum interpolator = itk::simple::sitkLinear,
                                         double defaultPixelValue = 0.0,
                                         PixelIDValueEnum outputPixelType = sitkUnknown );

SITKBasicFilters_EXPORT Image Resample ( const Image& image1,
                                         const Image& referenceImage,
                                         Transform transform = itk::simple::Transform(),
                                         InterpolatorEnum interpolator = itk::simple::sitkLinear,
                                         double defaultPixelValue = 0.0,
                                         PixelIDValueEnum outputPixelType = sitkUnknown );

SITKBasicFilters_EXPORT Image Resample ( const Image& image1,
                                         std::vector<uint32_t> size,
                                         Transform transform = itk::simple::Transform(),
                                         InterpolatorEnum interpolator = itk::simple::sitkLinear,
                                         std::vector<double> outputOrigin = std::vector<double>(3, 0.0),
                                         std::vector<double> outputSpacing = std::vector<double>(3, 1.0),
                                         std::vector<double> outputDirection = std::vector<double>(),
                                         double defaultPixelValue = 0.0,
                                         PixelIDValueEnum outputPixelType = sitkUnknown );
SITKBasicFilters_EXPORT Image PatchBasedDenoising (const Image& image1,
                                                   itk::simple::PatchBasedDenoisingImageFilter::NoiseModelType noiseModel,
                                                   double kernelBandwidthSigma = 400.0,
                                                   uint32_t patchRadius = 4u,
                                                   uint32_t numberOfIterations = 1u,
                                                   uint32_t numberOfSamplePatches = 200u,
                                                   double sampleVariance = 400.0,
                                                   double noiseSigma = 0.0,
                                                   double noiseModelFidelityWeight = 0.0 );

// Disable for certain wrapped languages due to overload shadowing
#if !defined(SWIGLUA)

SITKBasicFilters_EXPORT Image PatchBasedDenoising (const Image& image1,
                                                   double kernelBandwidthSigma = 400.0,
                                                   uint32_t patchRadius = 4u,
                                                   uint32_t numberOfIterations = 1u,
                                                   uint32_t numberOfSamplePatches = 200u,
                                                   double sampleVariance = 400.0);
#endif


     SITKBasicFilters_EXPORT Image DiscreteGaussian ( const Image& image1,
                                                      double variance,
                                                      unsigned int maximumKernelWidth = 32u,
                                                      double maximumError =  0.01,
                                                      bool useImageSpacing = true );


     SITKBasicFilters_EXPORT Image SmoothingRecursiveGaussian ( const Image& image1,
                                                                double sigma,
                                                                bool normalizeAcrossScale = false );

}
}
#endif