itk::simple::TransformToDisplacementFieldFilter Class Reference

Generate a displacement field from a coordinate transform. More...

#include <sitkTransformToDisplacementFieldFilter.h>

Inheritance diagram for itk::simple::TransformToDisplacementFieldFilter:

Collaboration diagram for itk::simple::TransformToDisplacementFieldFilter:

Public Types
typedef RealVectorPixelIDTypeList	PixelIDTypeList
typedef TransformToDisplacementFieldFilter	Self
Public Types inherited from itk::simple::ImageFilter< 0 >
typedef ImageFilter	Self
Public Types inherited from itk::simple::ProcessObject
typedef ProcessObject	Self

Public Member Functions
Image	Execute (const Transform &transform)
Image	Execute (const Transform &transform, PixelIDValueEnum outputPixelType, const std::vector< unsigned int > &size, const std::vector< double > &outputOrigin, const std::vector< double > &outputSpacing, std::vector< double > outputDirection)
std::string	GetName () const
std::vector< double >	GetOutputDirection () const
std::vector< double >	GetOutputOrigin () const
PixelIDValueEnum	GetOutputPixelType () const
	Get the ouput pixel type. More...
std::vector< double >	GetOutputSpacing () const
std::vector< unsigned int >	GetSize () const
Self &	SetOutputDirection (std::vector< double > OutputDirection)
Self &	SetOutputOrigin (const std::vector< double > &OutputOrigin)
Self &	SetOutputPixelType (PixelIDValueEnum OutputPixelType)
	Set the output pixel type, only sitkVectorFloat32 and sitkVectorFloat64 are supported. More...
Self &	SetOutputSpacing (const std::vector< double > &OutputSpacing)
void	SetReferenceImage (const Image &refImage)
Self &	SetSize (const std::vector< unsigned int > &Size)
std::string	ToString () const
	TransformToDisplacementFieldFilter ()
virtual	~TransformToDisplacementFieldFilter ()
Public Member Functions inherited from itk::simple::ImageFilter< 0 >
	ImageFilter ()
virtual	~ImageFilter ()=0
Public Member Functions inherited from itk::simple::ProcessObject
virtual void	Abort ()
virtual int	AddCommand (itk::simple::EventEnum event, itk::simple::Command &cmd)
	Add a Command Object to observer the event. More...
virtual float	GetProgress () const
	An Active Measurement of the progress of execution. More...
virtual bool	HasCommand (itk::simple::EventEnum event) const
	Query of this object has any registered commands for event. More...
	ProcessObject ()
virtual void	RemoveAllCommands ()
	Remove all registered commands. More...
virtual	~ProcessObject ()
virtual void	DebugOn ()
virtual void	DebugOff ()
virtual bool	GetDebug () const
virtual void	SetDebug (bool debugFlag)
virtual void	SetNumberOfThreads (unsigned int n)
virtual unsigned int	GetNumberOfThreads () const

Private Types
typedef Image(Self::*	MemberFunctionType) (const Transform *transform)

Private Member Functions
template<class TImageType >
Image	ExecuteInternal (const Transform *transform)

Private Attributes
nsstd::auto_ptr< detail::MemberFunctionFactory< MemberFunctionType > >	m_MemberFactory
std::vector< double >	m_OutputDirection
std::vector< double >	m_OutputOrigin
PixelIDValueEnum	m_OutputPixelType
std::vector< double >	m_OutputSpacing
std::vector< unsigned int >	m_Size

Friends
struct	detail::MemberFunctionAddressor< MemberFunctionType >

Additional Inherited Members
Static Public Member Functions inherited from itk::simple::ProcessObject
static bool	GetGlobalDefaultDebug ()
static void	GlobalDefaultDebugOff ()
static void	GlobalDefaultDebugOn ()
static void	SetGlobalDefaultDebug (bool debugFlag)
static void	GlobalWarningDisplayOn ()
static void	GlobalWarningDisplayOff ()
static void	SetGlobalWarningDisplay (bool flag)
static bool	GetGlobalWarningDisplay ()
static void	SetGlobalDefaultNumberOfThreads (unsigned int n)
static unsigned int	GetGlobalDefaultNumberOfThreads ()
static double	GetGlobalDefaultCoordinateTolerance ()
	Access the global tolerance to determine congruent spaces. More...
static void	SetGlobalDefaultCoordinateTolerance (double)
	Access the global tolerance to determine congruent spaces. More...
static double	GetGlobalDefaultDirectionTolerance ()
	Access the global tolerance to determine congruent spaces. More...
static void	SetGlobalDefaultDirectionTolerance (double)
	Access the global tolerance to determine congruent spaces. More...
Protected Member Functions inherited from itk::simple::ProcessObject
virtual unsigned long	AddITKObserver (const itk::EventObject &, itk::Command *)
virtual itk::ProcessObject *	GetActiveProcess ()
virtual void	OnActiveProcessDelete ()
virtual void	onCommandDelete (const itk::simple::Command *cmd) SITK_NOEXCEPT
virtual void	PreUpdate (itk::ProcessObject *p)
virtual void	RemoveITKObserver (EventCommand &e)
Protected Member Functions inherited from itk::simple::NonCopyable
	NonCopyable ()
Static Protected Member Functions inherited from itk::simple::ImageFilter< 0 >
static void	FixNonZeroIndex (TImageType *img)
Static Protected Member Functions inherited from itk::simple::ProcessObject
template<class TImageType >
static TImageType::ConstPointer	CastImageToITK (const Image &img)
template<class TImageType >
static Image	CastITKToImage (TImageType *img)
template<class TPixelType , unsigned int VImageDimension, unsigned int VLength, template< typename, unsigned int > class TVector>
static Image	CastITKToImage (itk::Image< TVector< TPixelType, VLength >, VImageDimension > *img)
static const itk::EventObject &	GetITKEventObject (EventEnum e)
template<typename T >
static std::ostream &	ToStringHelper (std::ostream &os, const T &v)
static std::ostream &	ToStringHelper (std::ostream &os, const char &v)
static std::ostream &	ToStringHelper (std::ostream &os, const signed char &v)
static std::ostream &	ToStringHelper (std::ostream &os, const unsigned char &v)

Detailed Description

Generate a displacement field from a coordinate transform.

Output information (spacing, size and direction) for the output image should be set. This information has the normal defaults of unit spacing, zero origin and identity direction. Optionally, the output information can be obtained from a reference image. If the reference image is provided and UseReferenceImage is On, then the spacing, origin and direction of the reference image will be used.

Since this filter produces an image which is a different size than its input, it needs to override several of the methods defined in ProcessObject in order to properly manage the pipeline execution model. In particular, this filter overrides ProcessObject::GenerateOutputInformation() .

This filter is implemented as a multithreaded filter. It provides a ThreadedGenerateData() method for its implementation.

Author

Marius Staring, Leiden University Medical Center, The Netherlands.

This class was taken from the Insight Journal paper: https://hdl.handle.net/1926/1387

See also

itk::simple::TransformToDisplacementFieldFilter for the procedural interface

itk::TransformToDisplacementFieldFilter for the Doxygen on the original ITK class.

Examples:

DemonsRegistration2/DemonsRegistration2.cxx.

Definition at line 50 of file sitkTransformToDisplacementFieldFilter.h.

Member Typedef Documentation

typedef Image(Self::* itk::simple::TransformToDisplacementFieldFilter::MemberFunctionType) (const Transform *transform)

private

Setup for member function dispatching

Definition at line 140 of file sitkTransformToDisplacementFieldFilter.h.

typedef RealVectorPixelIDTypeList itk::simple::TransformToDisplacementFieldFilter::PixelIDTypeList

Define the pixels types supported by this filter

Definition at line 62 of file sitkTransformToDisplacementFieldFilter.h.

typedef TransformToDisplacementFieldFilter itk::simple::TransformToDisplacementFieldFilter::Self

Definition at line 52 of file sitkTransformToDisplacementFieldFilter.h.

Constructor & Destructor Documentation

virtual itk::simple::TransformToDisplacementFieldFilter::~TransformToDisplacementFieldFilter ( )

virtual

Destructor

itk::simple::TransformToDisplacementFieldFilter::TransformToDisplacementFieldFilter

(

)

Default Constructor that takes no arguments and initializes default parameters

Member Function Documentation

Image itk::simple::TransformToDisplacementFieldFilter::Execute

(

const Transform &

transform

)

Execute the filter on the input image

Examples:

DemonsRegistration2/DemonsRegistration2.cxx.

Image itk::simple::TransformToDisplacementFieldFilter::Execute	(	const Transform &	transform,
		PixelIDValueEnum	outputPixelType,
		const std::vector< unsigned int > &	size,
		const std::vector< double > &	outputOrigin,
		const std::vector< double > &	outputSpacing,
		std::vector< double >	outputDirection
	)

Execute the filter on the input image with the given parameters

template<class TImageType >

Image itk::simple::TransformToDisplacementFieldFilter::ExecuteInternal ( const Transform *  transform )

private

std::string itk::simple::TransformToDisplacementFieldFilter::GetName ( ) const

inlinevirtual

Name of this class

Implements itk::simple::ProcessObject.

Definition at line 118 of file sitkTransformToDisplacementFieldFilter.h.

std::vector<double> itk::simple::TransformToDisplacementFieldFilter::GetOutputDirection ( ) const

inline

Set the output direction cosine matrix.

Definition at line 116 of file sitkTransformToDisplacementFieldFilter.h.

std::vector<double> itk::simple::TransformToDisplacementFieldFilter::GetOutputOrigin ( ) const

inline

Get the output image origin.

Definition at line 96 of file sitkTransformToDisplacementFieldFilter.h.

PixelIDValueEnum itk::simple::TransformToDisplacementFieldFilter::GetOutputPixelType ( ) const

inline

Get the ouput pixel type.

Definition at line 76 of file sitkTransformToDisplacementFieldFilter.h.

std::vector<double> itk::simple::TransformToDisplacementFieldFilter::GetOutputSpacing ( ) const

inline

Get the output image spacing.

Definition at line 106 of file sitkTransformToDisplacementFieldFilter.h.

std::vector<unsigned int> itk::simple::TransformToDisplacementFieldFilter::GetSize ( ) const

inline

Set/Get the size of the output image.

Definition at line 86 of file sitkTransformToDisplacementFieldFilter.h.

Self& itk::simple::TransformToDisplacementFieldFilter::SetOutputDirection ( std::vector< double >  OutputDirection )

inline

Set the output direction cosine matrix.

Definition at line 111 of file sitkTransformToDisplacementFieldFilter.h.

Self& itk::simple::TransformToDisplacementFieldFilter::SetOutputOrigin ( const std::vector< double > &  OutputOrigin )

inline

Set the output image origin.

Definition at line 91 of file sitkTransformToDisplacementFieldFilter.h.

Self& itk::simple::TransformToDisplacementFieldFilter::SetOutputPixelType ( PixelIDValueEnum  OutputPixelType )

inline

Set the output pixel type, only sitkVectorFloat32 and sitkVectorFloat64 are supported.

Definition at line 71 of file sitkTransformToDisplacementFieldFilter.h.

Self& itk::simple::TransformToDisplacementFieldFilter::SetOutputSpacing ( const std::vector< double > &  OutputSpacing )

inline

Set the output image spacing.

Definition at line 101 of file sitkTransformToDisplacementFieldFilter.h.

void itk::simple::TransformToDisplacementFieldFilter::SetReferenceImage

(

const Image &

refImage

)

This methods sets the size, origin, spacing and direction to that of the provided image

Examples:

DemonsRegistration2/DemonsRegistration2.cxx.

Self& itk::simple::TransformToDisplacementFieldFilter::SetSize ( const std::vector< unsigned int > &  Size )

inline

Set/Get the size of the output image.

Definition at line 81 of file sitkTransformToDisplacementFieldFilter.h.

std::string itk::simple::TransformToDisplacementFieldFilter::ToString ( ) const

virtual

Print ourselves out

Reimplemented from itk::simple::ProcessObject.

Friends And Related Function Documentation

friend struct detail::MemberFunctionAddressor< MemberFunctionType >

friend

Definition at line 144 of file sitkTransformToDisplacementFieldFilter.h.

Member Data Documentation

nsstd::auto_ptr<detail::MemberFunctionFactory<MemberFunctionType> > itk::simple::TransformToDisplacementFieldFilter::m_MemberFactory

private

Definition at line 146 of file sitkTransformToDisplacementFieldFilter.h.

std::vector<double> itk::simple::TransformToDisplacementFieldFilter::m_OutputDirection

private

Definition at line 154 of file sitkTransformToDisplacementFieldFilter.h.

std::vector<double> itk::simple::TransformToDisplacementFieldFilter::m_OutputOrigin

private

Definition at line 151 of file sitkTransformToDisplacementFieldFilter.h.

PixelIDValueEnum itk::simple::TransformToDisplacementFieldFilter::m_OutputPixelType

private

Definition at line 149 of file sitkTransformToDisplacementFieldFilter.h.

std::vector<double> itk::simple::TransformToDisplacementFieldFilter::m_OutputSpacing

private

Definition at line 152 of file sitkTransformToDisplacementFieldFilter.h.

std::vector<unsigned int> itk::simple::TransformToDisplacementFieldFilter::m_Size

private

Definition at line 150 of file sitkTransformToDisplacementFieldFilter.h.

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The documentation for this class was generated from the following file:

• sitkTransformToDisplacementFieldFilter.h