itk::simple::NeighborhoodConnectedImageFilter Class Reference

Label pixels that are connected to a seed and lie within a neighborhood. More...

#include <sitkNeighborhoodConnectedImageFilter.h>

Inheritance diagram for itk::simple::NeighborhoodConnectedImageFilter:

Collaboration diagram for itk::simple::NeighborhoodConnectedImageFilter:

Public Types
typedef BasicPixelIDTypeList	PixelIDTypeList
typedef NeighborhoodConnectedImageFilter	Self
Public Types inherited from itk::simple::ImageFilter< 1 >
typedef ImageFilter	Self
Public Types inherited from itk::simple::ProcessObject
typedef ProcessObject	Self

Public Member Functions
Self &	AddSeed (const std::vector< unsigned int > &idx)
Self &	ClearSeeds ()
Image	Execute (const Image &image1)
Image	Execute (const Image &image1, const std::vector< std::vector< unsigned int > > &seedList, double lower, double upper, const std::vector< unsigned int > &radius, double replaceValue)
double	GetLower () const
std::string	GetName () const
std::vector< unsigned int >	GetRadius () const
double	GetReplaceValue () const
std::vector< std::vector< unsigned int > >	GetSeedList () const
double	GetUpper () const
	NeighborhoodConnectedImageFilter ()
Self &	SetLower (double Lower)
Self &	SetRadius (const std::vector< unsigned int > &Radius)
Self &	SetRadius (unsigned int value)
Self &	SetReplaceValue (double ReplaceValue)
Self &	SetSeed (const std::vector< unsigned int > &idx)
Self &	SetSeedList (const std::vector< std::vector< unsigned int > > &t)
Self &	SetUpper (double Upper)
std::string	ToString () const
virtual	~NeighborhoodConnectedImageFilter ()
Public Member Functions inherited from itk::simple::ImageFilter< 1 >
	ImageFilter ()
virtual	~ImageFilter ()=0
Public Member Functions inherited from itk::simple::ProcessObject
virtual void	Abort ()
virtual int	AddCommand (itk::simple::EventEnum event, itk::simple::Command &cmd)
	Add a Command Object to observer the event. More...
virtual float	GetProgress () const
	An Active Measurement of the progress of execution. More...
virtual bool	HasCommand (itk::simple::EventEnum event) const
	Query of this object has any registered commands for event. More...
	ProcessObject ()
virtual void	RemoveAllCommands ()
	Remove all registered commands. More...
virtual	~ProcessObject ()
virtual void	DebugOn ()
virtual void	DebugOff ()
virtual bool	GetDebug () const
virtual void	SetDebug (bool debugFlag)
virtual void	SetNumberOfThreads (unsigned int n)
virtual unsigned int	GetNumberOfThreads () const

Private Types
typedef Image(Self::*	MemberFunctionType) (const Image &image1)

Private Member Functions
template<class TImageType >
Image	ExecuteInternal (const Image &image1)

Private Attributes
double	m_Lower
nsstd::auto_ptr< detail::MemberFunctionFactory< MemberFunctionType > >	m_MemberFactory
std::vector< unsigned int >	m_Radius
double	m_ReplaceValue
std::vector< std::vector< unsigned int > >	m_SeedList
double	m_Upper

Friends
struct	detail::MemberFunctionAddressor< MemberFunctionType >

Additional Inherited Members
Static Public Member Functions inherited from itk::simple::ProcessObject
static bool	GetGlobalDefaultDebug ()
static void	GlobalDefaultDebugOff ()
static void	GlobalDefaultDebugOn ()
static void	SetGlobalDefaultDebug (bool debugFlag)
static void	GlobalWarningDisplayOn ()
static void	GlobalWarningDisplayOff ()
static void	SetGlobalWarningDisplay (bool flag)
static bool	GetGlobalWarningDisplay ()
static void	SetGlobalDefaultNumberOfThreads (unsigned int n)
static unsigned int	GetGlobalDefaultNumberOfThreads ()
static double	GetGlobalDefaultCoordinateTolerance ()
	Access the global tolerance to determine congruent spaces. More...
static void	SetGlobalDefaultCoordinateTolerance (double)
	Access the global tolerance to determine congruent spaces. More...
static double	GetGlobalDefaultDirectionTolerance ()
	Access the global tolerance to determine congruent spaces. More...
static void	SetGlobalDefaultDirectionTolerance (double)
	Access the global tolerance to determine congruent spaces. More...
Protected Member Functions inherited from itk::simple::ProcessObject
virtual unsigned long	AddITKObserver (const itk::EventObject &, itk::Command *)
virtual itk::ProcessObject *	GetActiveProcess ()
virtual void	OnActiveProcessDelete ()
virtual void	onCommandDelete (const itk::simple::Command *cmd) SITK_NOEXCEPT
virtual void	PreUpdate (itk::ProcessObject *p)
virtual void	RemoveITKObserver (EventCommand &e)
Protected Member Functions inherited from itk::simple::NonCopyable
	NonCopyable ()
Static Protected Member Functions inherited from itk::simple::ImageFilter< 1 >
static void	FixNonZeroIndex (TImageType *img)
Static Protected Member Functions inherited from itk::simple::ProcessObject
template<class TImageType >
static TImageType::ConstPointer	CastImageToITK (const Image &img)
template<class TImageType >
static Image	CastITKToImage (TImageType *img)
template<class TPixelType , unsigned int VImageDimension, unsigned int VLength, template< typename, unsigned int > class TVector>
static Image	CastITKToImage (itk::Image< TVector< TPixelType, VLength >, VImageDimension > *img)
static const itk::EventObject &	GetITKEventObject (EventEnum e)
template<typename T >
static std::ostream &	ToStringHelper (std::ostream &os, const T &v)
static std::ostream &	ToStringHelper (std::ostream &os, const char &v)
static std::ostream &	ToStringHelper (std::ostream &os, const signed char &v)
static std::ostream &	ToStringHelper (std::ostream &os, const unsigned char &v)

Detailed Description

Label pixels that are connected to a seed and lie within a neighborhood.

NeighborhoodConnectedImageFilter labels pixels with ReplaceValue that are connected to an initial Seed AND whose neighbors all lie within a Lower and Upper threshold range.

See also

itk::simple::NeighborhoodConnected for the procedural interface

itk::NeighborhoodConnectedImageFilter for the Doxygen on the original ITK class.

Examples:

Segmentation/NeighborhoodConnectedImageFilter.cxx.

Definition at line 42 of file sitkNeighborhoodConnectedImageFilter.h.

Member Typedef Documentation

typedef Image(Self::* itk::simple::NeighborhoodConnectedImageFilter::MemberFunctionType) (const Image &image1)

private

Setup for member function dispatching

Definition at line 153 of file sitkNeighborhoodConnectedImageFilter.h.

typedef BasicPixelIDTypeList itk::simple::NeighborhoodConnectedImageFilter::PixelIDTypeList

Define the pixels types supported by this filter

Definition at line 54 of file sitkNeighborhoodConnectedImageFilter.h.

typedef NeighborhoodConnectedImageFilter itk::simple::NeighborhoodConnectedImageFilter::Self

Definition at line 44 of file sitkNeighborhoodConnectedImageFilter.h.

Constructor & Destructor Documentation

virtual itk::simple::NeighborhoodConnectedImageFilter::~NeighborhoodConnectedImageFilter ( )

virtual

Destructor

itk::simple::NeighborhoodConnectedImageFilter::NeighborhoodConnectedImageFilter

(

)

Default Constructor that takes no arguments and initializes default parameters

Member Function Documentation

Self& itk::simple::NeighborhoodConnectedImageFilter::AddSeed ( const std::vector< unsigned int > &  idx )

inline

AddSeed - Add a seed to the end of the list

Examples:

Segmentation/NeighborhoodConnectedImageFilter.cxx.

Definition at line 129 of file sitkNeighborhoodConnectedImageFilter.h.

Self& itk::simple::NeighborhoodConnectedImageFilter::ClearSeeds ( )

inline

ClearSeeds - Clear out all seeds in the list

Definition at line 114 of file sitkNeighborhoodConnectedImageFilter.h.

Image itk::simple::NeighborhoodConnectedImageFilter::Execute

(

const Image &

image1

)

Execute the filter on the input image

Examples:

Segmentation/NeighborhoodConnectedImageFilter.cxx.

Image itk::simple::NeighborhoodConnectedImageFilter::Execute	(	const Image &	image1,
		const std::vector< std::vector< unsigned int > > &	seedList,
		double	lower,
		double	upper,
		const std::vector< unsigned int > &	radius,
		double	replaceValue
	)

Execute the filter on the input image with the given parameters

template<class TImageType >

Image itk::simple::NeighborhoodConnectedImageFilter::ExecuteInternal ( const Image &  image1 )

private

double itk::simple::NeighborhoodConnectedImageFilter::GetLower ( ) const

inline

Set/Get the lower threshold. The default is 0.

Definition at line 66 of file sitkNeighborhoodConnectedImageFilter.h.

std::string itk::simple::NeighborhoodConnectedImageFilter::GetName ( ) const

inlinevirtual

Name of this class

Implements itk::simple::ProcessObject.

Definition at line 136 of file sitkNeighborhoodConnectedImageFilter.h.

std::vector<unsigned int> itk::simple::NeighborhoodConnectedImageFilter::GetRadius ( ) const

inline

Get the radius of the neighborhood used to compute the median

Definition at line 90 of file sitkNeighborhoodConnectedImageFilter.h.

double itk::simple::NeighborhoodConnectedImageFilter::GetReplaceValue ( ) const

inline

Set/Get value to replace thresholded pixels. Pixels that lie * within Lower and Upper (inclusive) will be replaced with this value. The default is 1.

Definition at line 100 of file sitkNeighborhoodConnectedImageFilter.h.

std::vector< std::vector<unsigned int> > itk::simple::NeighborhoodConnectedImageFilter::GetSeedList ( ) const

inline

Get SeedList

Definition at line 108 of file sitkNeighborhoodConnectedImageFilter.h.

double itk::simple::NeighborhoodConnectedImageFilter::GetUpper ( ) const

inline

Set/Get the upper threshold. The default is the largest possible value for the InputPixelType.

Definition at line 76 of file sitkNeighborhoodConnectedImageFilter.h.

Self& itk::simple::NeighborhoodConnectedImageFilter::SetLower ( double  Lower )

inline

Set/Get the lower threshold. The default is 0.

Examples:

Segmentation/NeighborhoodConnectedImageFilter.cxx.

Definition at line 61 of file sitkNeighborhoodConnectedImageFilter.h.

Self& itk::simple::NeighborhoodConnectedImageFilter::SetRadius ( const std::vector< unsigned int > &  Radius )

inline

Set the radius of the neighborhood used for a mask.

Examples:

Segmentation/NeighborhoodConnectedImageFilter.cxx.

Definition at line 81 of file sitkNeighborhoodConnectedImageFilter.h.

Self& itk::simple::NeighborhoodConnectedImageFilter::SetRadius ( unsigned int  value )

inline

Set the values of the Radius vector all to value

Definition at line 84 of file sitkNeighborhoodConnectedImageFilter.h.

Self& itk::simple::NeighborhoodConnectedImageFilter::SetReplaceValue ( double  ReplaceValue )

inline

Set/Get value to replace thresholded pixels. Pixels that lie * within Lower and Upper (inclusive) will be replaced with this value. The default is 1.

Examples:

Segmentation/NeighborhoodConnectedImageFilter.cxx.

Definition at line 95 of file sitkNeighborhoodConnectedImageFilter.h.

Self& itk::simple::NeighborhoodConnectedImageFilter::SetSeed ( const std::vector< unsigned int > &  idx )

inline

SetSeed - Set list to a single seed

Definition at line 121 of file sitkNeighborhoodConnectedImageFilter.h.

Self& itk::simple::NeighborhoodConnectedImageFilter::SetSeedList ( const std::vector< std::vector< unsigned int > > &  t )

inline

Set SeedList

Definition at line 102 of file sitkNeighborhoodConnectedImageFilter.h.

Self& itk::simple::NeighborhoodConnectedImageFilter::SetUpper ( double  Upper )

inline

Set/Get the upper threshold. The default is the largest possible value for the InputPixelType.

Examples:

Segmentation/NeighborhoodConnectedImageFilter.cxx.

Definition at line 71 of file sitkNeighborhoodConnectedImageFilter.h.

std::string itk::simple::NeighborhoodConnectedImageFilter::ToString ( ) const

virtual

Print ourselves out

Reimplemented from itk::simple::ProcessObject.

Friends And Related Function Documentation

friend struct detail::MemberFunctionAddressor< MemberFunctionType >

friend

Definition at line 157 of file sitkNeighborhoodConnectedImageFilter.h.

Member Data Documentation

double itk::simple::NeighborhoodConnectedImageFilter::m_Lower

private

Definition at line 162 of file sitkNeighborhoodConnectedImageFilter.h.

nsstd::auto_ptr<detail::MemberFunctionFactory<MemberFunctionType> > itk::simple::NeighborhoodConnectedImageFilter::m_MemberFactory

private

Definition at line 159 of file sitkNeighborhoodConnectedImageFilter.h.

std::vector<unsigned int> itk::simple::NeighborhoodConnectedImageFilter::m_Radius

private

Definition at line 165 of file sitkNeighborhoodConnectedImageFilter.h.

double itk::simple::NeighborhoodConnectedImageFilter::m_ReplaceValue

private

Definition at line 168 of file sitkNeighborhoodConnectedImageFilter.h.

std::vector< std::vector<unsigned int> > itk::simple::NeighborhoodConnectedImageFilter::m_SeedList

private

List of interor seed points used to initialize the region growing segmentation

Definition at line 171 of file sitkNeighborhoodConnectedImageFilter.h.

double itk::simple::NeighborhoodConnectedImageFilter::m_Upper

private

Definition at line 163 of file sitkNeighborhoodConnectedImageFilter.h.

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The documentation for this class was generated from the following file:

• sitkNeighborhoodConnectedImageFilter.h