SimpleITK
1.2.4
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Threshold an image using the IsoData Threshold. More...
#include <sitkIsoDataThresholdImageFilter.h>
Public Types | |
typedef BasicPixelIDTypeList | PixelIDTypeList |
typedef IsoDataThresholdImageFilter | Self |
Public Types inherited from itk::simple::ImageFilter< 0 > | |
typedef ImageFilter | Self |
Public Types inherited from itk::simple::ProcessObject | |
typedef ProcessObject | Self |
Public Member Functions | |
Image | Execute (const Image &image, const Image &maskImage) |
Image | Execute (const Image &image) |
Image | Execute (const Image &image, const Image &maskImage, uint8_t insideValue, uint8_t outsideValue, uint32_t numberOfHistogramBins, bool maskOutput, uint8_t maskValue) |
Image | Execute (const Image &image, uint8_t insideValue, uint8_t outsideValue, uint32_t numberOfHistogramBins, bool maskOutput, uint8_t maskValue) |
uint8_t | GetInsideValue () const |
bool | GetMaskOutput () const |
uint8_t | GetMaskValue () const |
std::string | GetName () const |
uint32_t | GetNumberOfHistogramBins () const |
uint8_t | GetOutsideValue () const |
double | GetThreshold () const |
Get the computed threshold. More... | |
IsoDataThresholdImageFilter () | |
Self & | MaskOutputOff () |
Self & | MaskOutputOn () |
Self & | SetInsideValue (uint8_t InsideValue) |
Self & | SetMaskOutput (bool MaskOutput) |
Self & | SetMaskValue (uint8_t MaskValue) |
Self & | SetNumberOfHistogramBins (uint32_t NumberOfHistogramBins) |
Self & | SetOutsideValue (uint8_t OutsideValue) |
std::string | ToString () const |
virtual | ~IsoDataThresholdImageFilter () |
Public Member Functions inherited from itk::simple::ImageFilter< 0 > | |
ImageFilter () | |
virtual | ~ImageFilter ()=0 |
Public Member Functions inherited from itk::simple::ProcessObject | |
virtual void | Abort () |
virtual int | AddCommand (itk::simple::EventEnum event, itk::simple::Command &cmd) |
Add a Command Object to observer the event. More... | |
virtual float | GetProgress () const |
An Active Measurement of the progress of execution. More... | |
virtual bool | HasCommand (itk::simple::EventEnum event) const |
Query of this object has any registered commands for event. More... | |
ProcessObject () | |
virtual void | RemoveAllCommands () |
Remove all registered commands. More... | |
virtual | ~ProcessObject () |
virtual void | DebugOn () |
virtual void | DebugOff () |
virtual bool | GetDebug () const |
virtual void | SetDebug (bool debugFlag) |
virtual void | SetNumberOfThreads (unsigned int n) |
virtual unsigned int | GetNumberOfThreads () const |
Private Types | |
typedef Image(Self::* | MemberFunctionType) (const Image *image, const Image *maskImage) |
Private Member Functions | |
template<class TImageType > | |
Image | ExecuteInternal (const Image *image, const Image *maskImage) |
Private Attributes | |
uint8_t | m_InsideValue |
bool | m_MaskOutput |
uint8_t | m_MaskValue |
nsstd::auto_ptr< detail::MemberFunctionFactory< MemberFunctionType > > | m_MemberFactory |
uint32_t | m_NumberOfHistogramBins |
uint8_t | m_OutsideValue |
double | m_Threshold |
Friends | |
struct | detail::MemberFunctionAddressor< MemberFunctionType > |
Additional Inherited Members | |
Static Public Member Functions inherited from itk::simple::ProcessObject | |
static bool | GetGlobalDefaultDebug () |
static void | GlobalDefaultDebugOff () |
static void | GlobalDefaultDebugOn () |
static void | SetGlobalDefaultDebug (bool debugFlag) |
static void | GlobalWarningDisplayOn () |
static void | GlobalWarningDisplayOff () |
static void | SetGlobalWarningDisplay (bool flag) |
static bool | GetGlobalWarningDisplay () |
static void | SetGlobalDefaultNumberOfThreads (unsigned int n) |
static unsigned int | GetGlobalDefaultNumberOfThreads () |
static double | GetGlobalDefaultCoordinateTolerance () |
Access the global tolerance to determine congruent spaces. More... | |
static void | SetGlobalDefaultCoordinateTolerance (double) |
Access the global tolerance to determine congruent spaces. More... | |
static double | GetGlobalDefaultDirectionTolerance () |
Access the global tolerance to determine congruent spaces. More... | |
static void | SetGlobalDefaultDirectionTolerance (double) |
Access the global tolerance to determine congruent spaces. More... | |
Protected Member Functions inherited from itk::simple::ProcessObject | |
virtual unsigned long | AddITKObserver (const itk::EventObject &, itk::Command *) |
virtual itk::ProcessObject * | GetActiveProcess () |
virtual void | OnActiveProcessDelete () |
virtual void | onCommandDelete (const itk::simple::Command *cmd) SITK_NOEXCEPT |
virtual void | PreUpdate (itk::ProcessObject *p) |
virtual void | RemoveITKObserver (EventCommand &e) |
Protected Member Functions inherited from itk::simple::NonCopyable | |
NonCopyable () | |
Static Protected Member Functions inherited from itk::simple::ImageFilter< 0 > | |
static void | FixNonZeroIndex (TImageType *img) |
Static Protected Member Functions inherited from itk::simple::ProcessObject | |
template<class TImageType > | |
static TImageType::ConstPointer | CastImageToITK (const Image &img) |
template<class TImageType > | |
static Image | CastITKToImage (TImageType *img) |
template<class TPixelType , unsigned int VImageDimension, unsigned int VLength, template< typename, unsigned int > class TVector> | |
static Image | CastITKToImage (itk::Image< TVector< TPixelType, VLength >, VImageDimension > *img) |
static const itk::EventObject & | GetITKEventObject (EventEnum e) |
template<typename T > | |
static std::ostream & | ToStringHelper (std::ostream &os, const T &v) |
static std::ostream & | ToStringHelper (std::ostream &os, const char &v) |
static std::ostream & | ToStringHelper (std::ostream &os, const signed char &v) |
static std::ostream & | ToStringHelper (std::ostream &os, const unsigned char &v) |
Threshold an image using the IsoData Threshold.
This filter creates a binary thresholded image that separates an image into foreground and background components. The filter computes the threshold using the IsoDataThresholdCalculator and applies that threshold to the input image using the BinaryThresholdImageFilter .
This implementation was taken from the Insight Journal paper: https://hdl.handle.net/10380/3279 or http://www.insight-journal.org/browse/publication/811
Definition at line 50 of file sitkIsoDataThresholdImageFilter.h.
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Setup for member function dispatching
Definition at line 149 of file sitkIsoDataThresholdImageFilter.h.
Define the pixels types supported by this filter
Definition at line 62 of file sitkIsoDataThresholdImageFilter.h.
Definition at line 52 of file sitkIsoDataThresholdImageFilter.h.
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Destructor
itk::simple::IsoDataThresholdImageFilter::IsoDataThresholdImageFilter | ( | ) |
Default Constructor that takes no arguments and initializes default parameters
Image itk::simple::IsoDataThresholdImageFilter::Execute | ( | const Image & | image, |
const Image & | maskImage | ||
) |
Execute the filter on the input image
Image itk::simple::IsoDataThresholdImageFilter::Execute | ( | const Image & | image, |
const Image & | maskImage, | ||
uint8_t | insideValue, | ||
uint8_t | outsideValue, | ||
uint32_t | numberOfHistogramBins, | ||
bool | maskOutput, | ||
uint8_t | maskValue | ||
) |
Execute the filter on the input image with the given parameters
Image itk::simple::IsoDataThresholdImageFilter::Execute | ( | const Image & | image, |
uint8_t | insideValue, | ||
uint8_t | outsideValue, | ||
uint32_t | numberOfHistogramBins, | ||
bool | maskOutput, | ||
uint8_t | maskValue | ||
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Get the "inside" pixel value.
Definition at line 76 of file sitkIsoDataThresholdImageFilter.h.
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Definition at line 111 of file sitkIsoDataThresholdImageFilter.h.
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Definition at line 120 of file sitkIsoDataThresholdImageFilter.h.
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Name of this class
Implements itk::simple::ProcessObject.
Definition at line 130 of file sitkIsoDataThresholdImageFilter.h.
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Definition at line 98 of file sitkIsoDataThresholdImageFilter.h.
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Get the "outside" pixel value.
Definition at line 88 of file sitkIsoDataThresholdImageFilter.h.
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Get the computed threshold.
This is a measurement. Its value is updated in the Execute methods, so the value will only be valid after an execution.
Definition at line 127 of file sitkIsoDataThresholdImageFilter.h.
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Definition at line 107 of file sitkIsoDataThresholdImageFilter.h.
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Set the value of MaskOutput to true or false respectfully.
Definition at line 106 of file sitkIsoDataThresholdImageFilter.h.
Set the "inside" pixel value.
Definition at line 70 of file sitkIsoDataThresholdImageFilter.h.
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Do you want the output to be masked by the mask used in histogram construction. Only relevant if masking is in use.
Definition at line 103 of file sitkIsoDataThresholdImageFilter.h.
The value in the mask image, if used, indicating voxels that should be included. Default is the max of pixel type, as in the MaskedImageToHistogramFilter
Definition at line 116 of file sitkIsoDataThresholdImageFilter.h.
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Set/Get the number of histogram bins.
Definition at line 94 of file sitkIsoDataThresholdImageFilter.h.
Set the "outside" pixel value. The default value NumericTraits<OutputPixelType>::Zero.
Definition at line 82 of file sitkIsoDataThresholdImageFilter.h.
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Print ourselves out
Reimplemented from itk::simple::ProcessObject.
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Definition at line 153 of file sitkIsoDataThresholdImageFilter.h.
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Definition at line 158 of file sitkIsoDataThresholdImageFilter.h.
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Definition at line 161 of file sitkIsoDataThresholdImageFilter.h.
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Definition at line 162 of file sitkIsoDataThresholdImageFilter.h.
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Definition at line 155 of file sitkIsoDataThresholdImageFilter.h.
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Definition at line 160 of file sitkIsoDataThresholdImageFilter.h.
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Definition at line 159 of file sitkIsoDataThresholdImageFilter.h.
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Definition at line 164 of file sitkIsoDataThresholdImageFilter.h.