Remove the objects not connected to the boundary of the image. More...

#include <sitkBinaryGrindPeakImageFilter.h>

Inheritance diagram for itk::simple::BinaryGrindPeakImageFilter:

Collaboration diagram for itk::simple::BinaryGrindPeakImageFilter:

Public Types
typedef IntegerPixelIDTypeList	PixelIDTypeList

typedef BinaryGrindPeakImageFilter	Self

Public Types inherited from itk::simple::ImageFilter< 1 >
typedef ImageFilter	Self

Public Types inherited from itk::simple::ProcessObject
typedef ProcessObject	Self

Public Member Functions
	BinaryGrindPeakImageFilter ()

Image	Execute (const Image &image1)

Image	Execute (const Image &image1, bool fullyConnected, double foregroundValue, double backgroundValue)

Self &	FullyConnectedOff ()

Self &	FullyConnectedOn ()

double	GetBackgroundValue () const

double	GetForegroundValue () const

bool	GetFullyConnected () const

std::string	GetName () const

Self &	SetBackgroundValue (double BackgroundValue)

Self &	SetForegroundValue (double ForegroundValue)

Self &	SetFullyConnected (bool FullyConnected)

std::string	ToString () const

virtual	~BinaryGrindPeakImageFilter ()

Public Member Functions inherited from itk::simple::ImageFilter< 1 >
	ImageFilter ()

virtual	~ImageFilter ()=0

Public Member Functions inherited from itk::simple::ProcessObject
virtual void	Abort ()

virtual int	AddCommand (itk::simple::EventEnum event, itk::simple::Command &cmd)
	Add a Command Object to observer the event. More...

virtual float	GetProgress () const
	An Active Measurement of the progress of execution. More...

virtual bool	HasCommand (itk::simple::EventEnum event) const
	Query of this object has any registered commands for event. More...

	ProcessObject ()

virtual void	RemoveAllCommands ()
	Remove all registered commands. More...

virtual	~ProcessObject ()

virtual void	DebugOn ()

virtual void	DebugOff ()

virtual bool	GetDebug () const

virtual void	SetDebug (bool debugFlag)

virtual void	SetNumberOfThreads (unsigned int n)

virtual unsigned int	GetNumberOfThreads () const

Private Types
typedef Image(Self::*	MemberFunctionType) (const Image &image1)

Private Member Functions
template<class TImageType >
Image	ExecuteInternal (const Image &image1)

Private Attributes
double	m_BackgroundValue

double	m_ForegroundValue

bool	m_FullyConnected

nsstd::auto_ptr< detail::MemberFunctionFactory< MemberFunctionType > >	m_MemberFactory

Friends
struct	detail::MemberFunctionAddressor< MemberFunctionType >

Additional Inherited Members
Static Public Member Functions inherited from itk::simple::ProcessObject
static bool	GetGlobalDefaultDebug ()

static void	GlobalDefaultDebugOff ()

static void	GlobalDefaultDebugOn ()

static void	SetGlobalDefaultDebug (bool debugFlag)

static void	GlobalWarningDisplayOn ()

static void	GlobalWarningDisplayOff ()

static void	SetGlobalWarningDisplay (bool flag)

static bool	GetGlobalWarningDisplay ()

static void	SetGlobalDefaultNumberOfThreads (unsigned int n)

static unsigned int	GetGlobalDefaultNumberOfThreads ()

static double	GetGlobalDefaultCoordinateTolerance ()
	Access the global tolerance to determine congruent spaces. More...

static void	SetGlobalDefaultCoordinateTolerance (double)
	Access the global tolerance to determine congruent spaces. More...

static double	GetGlobalDefaultDirectionTolerance ()
	Access the global tolerance to determine congruent spaces. More...

static void	SetGlobalDefaultDirectionTolerance (double)
	Access the global tolerance to determine congruent spaces. More...

Protected Member Functions inherited from itk::simple::ProcessObject
virtual unsigned long	AddITKObserver (const itk::EventObject &, itk::Command *)

virtual itk::ProcessObject *	GetActiveProcess ()

virtual void	OnActiveProcessDelete ()

virtual void	onCommandDelete (const itk::simple::Command *cmd) SITK_NOEXCEPT

virtual void	PreUpdate (itk::ProcessObject *p)

virtual void	RemoveITKObserver (EventCommand &e)

Protected Member Functions inherited from itk::simple::NonCopyable
	NonCopyable ()

Static Protected Member Functions inherited from itk::simple::ImageFilter< 1 >
static void	FixNonZeroIndex (TImageType *img)

Static Protected Member Functions inherited from itk::simple::ProcessObject
template<class TImageType >
static TImageType::ConstPointer	CastImageToITK (const Image &img)

template<class TImageType >
static Image	CastITKToImage (TImageType *img)

template<class TPixelType , unsigned int VImageDimension, unsigned int VLength, template< typename, unsigned int > class TVector>
static Image	CastITKToImage (itk::Image< TVector< TPixelType, VLength >, VImageDimension > *img)

static const itk::EventObject &	GetITKEventObject (EventEnum e)

template<typename T >
static std::ostream &	ToStringHelper (std::ostream &os, const T &v)

static std::ostream &	ToStringHelper (std::ostream &os, const char &v)

static std::ostream &	ToStringHelper (std::ostream &os, const signed char &v)

static std::ostream &	ToStringHelper (std::ostream &os, const unsigned char &v)

Detailed Description

Remove the objects not connected to the boundary of the image.

BinaryGrindPeakImageFilter ginds peaks in a grayscale image.

Geodesic morphology and the grind peak algorithm is described in Chapter 6 of Pierre Soille's book "Morphological Image Analysis: Principles and Applications", Second Edition, Springer, 2003.

Author: Gaetan Lehmann. Biologie du Developpement et de la Reproduction, INRA de Jouy-en-Josas, France.

This implementation was taken from the Insight Journal paper: https://hdl.handle.net/1926/584 or http://www.insight-journal.org/browse/publication/176

See also: GrayscaleGrindPeakImageFilter; itk::simple::BinaryGrindPeak for the procedural interface; itk::BinaryGrindPeakImageFilter for the Doxygen on the original ITK class.

Definition at line 51 of file sitkBinaryGrindPeakImageFilter.h.

Member Typedef Documentation

typedef Image(Self::* itk::simple::BinaryGrindPeakImageFilter::MemberFunctionType) (const Image &image1)

private

Setup for member function dispatching

Definition at line 118 of file sitkBinaryGrindPeakImageFilter.h.

typedef IntegerPixelIDTypeList itk::simple::BinaryGrindPeakImageFilter::PixelIDTypeList

Define the pixels types supported by this filter

Definition at line 63 of file sitkBinaryGrindPeakImageFilter.h.

typedef BinaryGrindPeakImageFilter itk::simple::BinaryGrindPeakImageFilter::Self

Definition at line 53 of file sitkBinaryGrindPeakImageFilter.h.

Constructor & Destructor Documentation

virtual itk::simple::BinaryGrindPeakImageFilter::~BinaryGrindPeakImageFilter ( )

virtual

Destructor

itk::simple::BinaryGrindPeakImageFilter::BinaryGrindPeakImageFilter ( )

Default Constructor that takes no arguments and initializes default parameters

Member Function Documentation

Image itk::simple::BinaryGrindPeakImageFilter::Execute ( const Image & image1 )

Execute the filter on the input image

Image itk::simple::BinaryGrindPeakImageFilter::Execute	(	const Image &	image1,
		bool	fullyConnected,
		double	foregroundValue,
		double	backgroundValue
	)

Execute the filter on the input image with the given parameters

template<class TImageType >

Image itk::simple::BinaryGrindPeakImageFilter::ExecuteInternal ( const Image & image1 )

private

Self& itk::simple::BinaryGrindPeakImageFilter::FullyConnectedOff ( )

inline

Definition at line 74 of file sitkBinaryGrindPeakImageFilter.h.

Self& itk::simple::BinaryGrindPeakImageFilter::FullyConnectedOn ( )

inline

Set the value of FullyConnected to true or false respectfully.

Definition at line 73 of file sitkBinaryGrindPeakImageFilter.h.

double itk::simple::BinaryGrindPeakImageFilter::GetBackgroundValue ( ) const

inline

Set the value in eroded part of the image. Defaults to zero

Definition at line 99 of file sitkBinaryGrindPeakImageFilter.h.

double itk::simple::BinaryGrindPeakImageFilter::GetForegroundValue ( ) const

inline

Get the value in the image considered as "foreground". Defaults to maximum value of InputPixelType.

Definition at line 89 of file sitkBinaryGrindPeakImageFilter.h.

bool itk::simple::BinaryGrindPeakImageFilter::GetFullyConnected ( ) const

inline

Set/Get whether the connected components are defined strictly by face connectivity or by face+edge+vertex connectivity. Default is FullyConnectedOff. For objects that are 1 pixel wide, use FullyConnectedOn.

Definition at line 79 of file sitkBinaryGrindPeakImageFilter.h.

std::string itk::simple::BinaryGrindPeakImageFilter::GetName ( ) const

inlinevirtual

Name of this class

Implements itk::simple::ProcessObject.

Definition at line 101 of file sitkBinaryGrindPeakImageFilter.h.

Self& itk::simple::BinaryGrindPeakImageFilter::SetBackgroundValue ( double BackgroundValue )

inline

Set the value in eroded part of the image. Defaults to zero

Definition at line 94 of file sitkBinaryGrindPeakImageFilter.h.

Self& itk::simple::BinaryGrindPeakImageFilter::SetForegroundValue ( double ForegroundValue )

inline

Set the value in the image to consider as "foreground". Defaults to maximum value of InputPixelType.

Definition at line 84 of file sitkBinaryGrindPeakImageFilter.h.

Self& itk::simple::BinaryGrindPeakImageFilter::SetFullyConnected ( bool FullyConnected )

inline

Set/Get whether the connected components are defined strictly by face connectivity or by face+edge+vertex connectivity. Default is FullyConnectedOff. For objects that are 1 pixel wide, use FullyConnectedOn.

Definition at line 70 of file sitkBinaryGrindPeakImageFilter.h.

std::string itk::simple::BinaryGrindPeakImageFilter::ToString ( ) const

virtual

Print ourselves out

Reimplemented from itk::simple::ProcessObject.