itk::simple::BinaryClosingByReconstructionImageFilter Class Reference

binary closing by reconstruction of an image. More...

#include <sitkBinaryClosingByReconstructionImageFilter.h>

Inheritance diagram for itk::simple::BinaryClosingByReconstructionImageFilter:

Collaboration diagram for itk::simple::BinaryClosingByReconstructionImageFilter:

Public Types
enum	KernelType {   Annulus =sitkAnnulus,   Ball =sitkBall,   Box =sitkBox,   Cross =sitkCross }
typedef IntegerPixelIDTypeList	PixelIDTypeList
typedef BinaryClosingByReconstructionImageFilter	Self
Public Types inherited from itk::simple::ImageFilter< 1 >
typedef ImageFilter	Self
Public Types inherited from itk::simple::ProcessObject
typedef ProcessObject	Self

Public Member Functions
	BinaryClosingByReconstructionImageFilter ()
Image	Execute (const Image &image1)
Image	Execute (const Image &image1, double foregroundValue, bool fullyConnected)
Self &	FullyConnectedOff ()
Self &	FullyConnectedOn ()
double	GetForegroundValue () const
bool	GetFullyConnected () const
std::vector< uint32_t >	GetKernelRadius () const
KernelEnum	GetKernelType () const
std::string	GetName () const
Self &	SetForegroundValue (double ForegroundValue)
Self &	SetFullyConnected (bool FullyConnected)
Self &	SetKernelRadius (uint32_t r)
Self &	SetKernelRadius (const std::vector< uint32_t > &r)
Self &	SetKernelType (KernelEnum t)
Self &	SetKernelType (KernelType t)
std::string	ToString () const
virtual	~BinaryClosingByReconstructionImageFilter ()
Public Member Functions inherited from itk::simple::ImageFilter< 1 >
	ImageFilter ()
virtual	~ImageFilter ()=0
Public Member Functions inherited from itk::simple::ProcessObject
virtual void	Abort ()
virtual int	AddCommand (itk::simple::EventEnum event, itk::simple::Command &cmd)
	Add a Command Object to observer the event. More...
virtual float	GetProgress () const
	An Active Measurement of the progress of execution. More...
virtual bool	HasCommand (itk::simple::EventEnum event) const
	Query of this object has any registered commands for event. More...
	ProcessObject ()
virtual void	RemoveAllCommands ()
	Remove all registered commands. More...
virtual	~ProcessObject ()
virtual void	DebugOn ()
virtual void	DebugOff ()
virtual bool	GetDebug () const
virtual void	SetDebug (bool debugFlag)
virtual void	SetNumberOfThreads (unsigned int n)
virtual unsigned int	GetNumberOfThreads () const

Private Types
typedef Image(Self::*	MemberFunctionType) (const Image &image1)

Private Member Functions
template<class TImageType >
Image	ExecuteInternal (const Image &image1)

Private Attributes
double	m_ForegroundValue
bool	m_FullyConnected
std::vector< uint32_t >	m_KernelRadius
KernelEnum	m_KernelType
nsstd::auto_ptr< detail::MemberFunctionFactory< MemberFunctionType > >	m_MemberFactory

Friends
struct	detail::MemberFunctionAddressor< MemberFunctionType >

Additional Inherited Members
Static Public Member Functions inherited from itk::simple::ProcessObject
static bool	GetGlobalDefaultDebug ()
static void	GlobalDefaultDebugOff ()
static void	GlobalDefaultDebugOn ()
static void	SetGlobalDefaultDebug (bool debugFlag)
static void	GlobalWarningDisplayOn ()
static void	GlobalWarningDisplayOff ()
static void	SetGlobalWarningDisplay (bool flag)
static bool	GetGlobalWarningDisplay ()
static void	SetGlobalDefaultNumberOfThreads (unsigned int n)
static unsigned int	GetGlobalDefaultNumberOfThreads ()
static double	GetGlobalDefaultCoordinateTolerance ()
	Access the global tolerance to determine congruent spaces. More...
static void	SetGlobalDefaultCoordinateTolerance (double)
	Access the global tolerance to determine congruent spaces. More...
static double	GetGlobalDefaultDirectionTolerance ()
	Access the global tolerance to determine congruent spaces. More...
static void	SetGlobalDefaultDirectionTolerance (double)
	Access the global tolerance to determine congruent spaces. More...
Protected Member Functions inherited from itk::simple::ProcessObject
virtual unsigned long	AddITKObserver (const itk::EventObject &, itk::Command *)
virtual itk::ProcessObject *	GetActiveProcess ()
virtual void	OnActiveProcessDelete ()
virtual void	onCommandDelete (const itk::simple::Command *cmd) SITK_NOEXCEPT
virtual void	PreUpdate (itk::ProcessObject *p)
virtual void	RemoveITKObserver (EventCommand &e)
Protected Member Functions inherited from itk::simple::NonCopyable
	NonCopyable ()
Static Protected Member Functions inherited from itk::simple::ImageFilter< 1 >
static void	FixNonZeroIndex (TImageType *img)
Static Protected Member Functions inherited from itk::simple::ProcessObject
template<class TImageType >
static TImageType::ConstPointer	CastImageToITK (const Image &img)
template<class TImageType >
static Image	CastITKToImage (TImageType *img)
template<class TPixelType , unsigned int VImageDimension, unsigned int VLength, template< typename, unsigned int > class TVector>
static Image	CastITKToImage (itk::Image< TVector< TPixelType, VLength >, VImageDimension > *img)
static const itk::EventObject &	GetITKEventObject (EventEnum e)
template<typename T >
static std::ostream &	ToStringHelper (std::ostream &os, const T &v)
static std::ostream &	ToStringHelper (std::ostream &os, const char &v)
static std::ostream &	ToStringHelper (std::ostream &os, const signed char &v)
static std::ostream &	ToStringHelper (std::ostream &os, const unsigned char &v)

Detailed Description

binary closing by reconstruction of an image.

This filter removes small (i.e., smaller than the structuring element) holes in the image. It is defined as: Closing(f) = ReconstructionByErosion(Dilation(f)).

The structuring element is assumed to be composed of binary values (zero or one). Only elements of the structuring element having values > 0 are candidates for affecting the center pixel.

Author

Gaetan Lehmann. Biologie du Developpement et de la Reproduction, INRA de Jouy-en-Josas, France.

This implementation was taken from the Insight Journal paper: https://hdl.handle.net/1926/584 or http://www.insight-journal.org/browse/publication/176

See also

MorphologyImageFilter , ClosingByReconstructionImageFilter , BinaryOpeningByReconstructionImageFilter

itk::simple::BinaryClosingByReconstruction for the procedural interface

itk::BinaryClosingByReconstructionImageFilter for the Doxygen on the original ITK class.

Definition at line 51 of file sitkBinaryClosingByReconstructionImageFilter.h.

Member Typedef Documentation

typedef Image(Self::* itk::simple::BinaryClosingByReconstructionImageFilter::MemberFunctionType) (const Image &image1)

private

Setup for member function dispatching

Definition at line 133 of file sitkBinaryClosingByReconstructionImageFilter.h.

typedef IntegerPixelIDTypeList itk::simple::BinaryClosingByReconstructionImageFilter::PixelIDTypeList

Define the pixels types supported by this filter

Definition at line 63 of file sitkBinaryClosingByReconstructionImageFilter.h.

typedef BinaryClosingByReconstructionImageFilter itk::simple::BinaryClosingByReconstructionImageFilter::Self

Definition at line 53 of file sitkBinaryClosingByReconstructionImageFilter.h.

Member Enumeration Documentation

enum itk::simple::BinaryClosingByReconstructionImageFilter::KernelType

Kernel type enumeration

Enumerator
Annulus
Ball
Box
Cross

Definition at line 66 of file sitkBinaryClosingByReconstructionImageFilter.h.

Constructor & Destructor Documentation

virtual itk::simple::BinaryClosingByReconstructionImageFilter::~BinaryClosingByReconstructionImageFilter ( )

virtual

Destructor

itk::simple::BinaryClosingByReconstructionImageFilter::BinaryClosingByReconstructionImageFilter

(

)

Default Constructor that takes no arguments and initializes default parameters

Member Function Documentation

Image itk::simple::BinaryClosingByReconstructionImageFilter::Execute

(

const Image &

image1

)

Execute the filter on the input image

Image itk::simple::BinaryClosingByReconstructionImageFilter::Execute	(	const Image &	image1,
		double	foregroundValue,
		bool	fullyConnected
	)

Execute the filter on the input image with the given parameters

template<class TImageType >

Image itk::simple::BinaryClosingByReconstructionImageFilter::ExecuteInternal ( const Image &  image1 )

private

Self& itk::simple::BinaryClosingByReconstructionImageFilter::FullyConnectedOff ( )

inline

Definition at line 87 of file sitkBinaryClosingByReconstructionImageFilter.h.

Self& itk::simple::BinaryClosingByReconstructionImageFilter::FullyConnectedOn ( )

inline

Set the value of FullyConnected to true or false respectfully.

Definition at line 86 of file sitkBinaryClosingByReconstructionImageFilter.h.

double itk::simple::BinaryClosingByReconstructionImageFilter::GetForegroundValue ( ) const

inline

Get the value in the image considered as "foreground". Defaults to maximum value of InputPixelType.

Definition at line 78 of file sitkBinaryClosingByReconstructionImageFilter.h.

bool itk::simple::BinaryClosingByReconstructionImageFilter::GetFullyConnected ( ) const

inline

Set/Get whether the connected components are defined strictly by face connectivity or by face+edge+vertex connectivity. Default is FullyConnectedOff. For objects that are 1 pixel wide, use FullyConnectedOn.

Definition at line 92 of file sitkBinaryClosingByReconstructionImageFilter.h.

std::vector<uint32_t> itk::simple::BinaryClosingByReconstructionImageFilter::GetKernelRadius

(

)

const

KernelEnum itk::simple::BinaryClosingByReconstructionImageFilter::GetKernelType

(

)

const

std::string itk::simple::BinaryClosingByReconstructionImageFilter::GetName ( ) const

inlinevirtual

Name of this class

Implements itk::simple::ProcessObject.

Definition at line 115 of file sitkBinaryClosingByReconstructionImageFilter.h.

Self& itk::simple::BinaryClosingByReconstructionImageFilter::SetForegroundValue ( double  ForegroundValue )

inline

Set the value in the image to consider as "foreground". Defaults to maximum value of InputPixelType.

Definition at line 73 of file sitkBinaryClosingByReconstructionImageFilter.h.

Self& itk::simple::BinaryClosingByReconstructionImageFilter::SetFullyConnected ( bool  FullyConnected )

inline

Set/Get whether the connected components are defined strictly by face connectivity or by face+edge+vertex connectivity. Default is FullyConnectedOff. For objects that are 1 pixel wide, use FullyConnectedOn.

Definition at line 83 of file sitkBinaryClosingByReconstructionImageFilter.h.

Self& itk::simple::BinaryClosingByReconstructionImageFilter::SetKernelRadius

(

uint32_t

r

)

Kernel radius as a scale for isotropic structures

Self& itk::simple::BinaryClosingByReconstructionImageFilter::SetKernelRadius

(

const std::vector< uint32_t > &

r

)

Set/Get the radius of the kernel structuring element as a vector.

If the dimension of the image is greater then the length of r, then the radius will be padded. If it is less the r will be truncated.

Self& itk::simple::BinaryClosingByReconstructionImageFilter::SetKernelType

(

KernelEnum

t

)

Set/Get the kernel or structuring elemenent used for the morphology

Self& itk::simple::BinaryClosingByReconstructionImageFilter::SetKernelType

(

KernelType

t

)

std::string itk::simple::BinaryClosingByReconstructionImageFilter::ToString ( ) const

virtual

Print ourselves out

Reimplemented from itk::simple::ProcessObject.

Friends And Related Function Documentation

friend struct detail::MemberFunctionAddressor< MemberFunctionType >

friend

Definition at line 137 of file sitkBinaryClosingByReconstructionImageFilter.h.

Member Data Documentation

double itk::simple::BinaryClosingByReconstructionImageFilter::m_ForegroundValue

private

Definition at line 142 of file sitkBinaryClosingByReconstructionImageFilter.h.

bool itk::simple::BinaryClosingByReconstructionImageFilter::m_FullyConnected

private

Definition at line 144 of file sitkBinaryClosingByReconstructionImageFilter.h.

std::vector<uint32_t> itk::simple::BinaryClosingByReconstructionImageFilter::m_KernelRadius

private

Definition at line 147 of file sitkBinaryClosingByReconstructionImageFilter.h.

KernelEnum itk::simple::BinaryClosingByReconstructionImageFilter::m_KernelType

private

KernelType

Definition at line 150 of file sitkBinaryClosingByReconstructionImageFilter.h.

nsstd::auto_ptr<detail::MemberFunctionFactory<MemberFunctionType> > itk::simple::BinaryClosingByReconstructionImageFilter::m_MemberFactory

private

Definition at line 139 of file sitkBinaryClosingByReconstructionImageFilter.h.

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The documentation for this class was generated from the following file:

• sitkBinaryClosingByReconstructionImageFilter.h