Dense implementation of the Chan and Vese multiphase level set image filter. More...

#include <sitkScalarChanAndVeseDenseLevelSetImageFilter.h>

Inheritance diagram for itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter:

Collaboration diagram for itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter:

Public Types
enum	HeavisideStepFunctionType { AtanRegularizedHeaviside, SinRegularizedHeaviside, Heaviside }

typedef RealPixelIDTypeList	PixelIDTypeList

typedef ScalarChanAndVeseDenseLevelSetImageFilter	Self

Public Types inherited from itk::simple::ImageFilter< 2 >
typedef ImageFilter	Self

Public Types inherited from itk::simple::ProcessObject
typedef ProcessObject	Self

Public Member Functions
Image	Execute (const Image &image1, const Image &image2)

Image	Execute (const Image &image1, const Image &image2, double maximumRMSError, uint32_t numberOfIterations, double lambda1, double lambda2, double epsilon, double curvatureWeight, double areaWeight, double reinitializationSmoothingWeight, double volume, double volumeMatchingWeight, ScalarChanAndVeseDenseLevelSetImageFilter::HeavisideStepFunctionType heavisideStepFunction, bool useImageSpacing)

double	GetAreaWeight () const

double	GetCurvatureWeight () const

uint32_t	GetElapsedIterations () const
	Number of iterations run. More...

double	GetEpsilon () const

HeavisideStepFunctionType	GetHeavisideStepFunction () const

double	GetLambda1 () const

double	GetLambda2 () const

double	GetMaximumRMSError () const

std::string	GetName () const

uint32_t	GetNumberOfIterations () const

double	GetReinitializationSmoothingWeight () const

double	GetRMSChange () const
	The Root Mean Square of the levelset upon termination. More...

bool	GetUseImageSpacing () const

double	GetVolume () const

double	GetVolumeMatchingWeight () const

	ScalarChanAndVeseDenseLevelSetImageFilter ()

Self &	SetAreaWeight (double AreaWeight)

Self &	SetCurvatureWeight (double CurvatureWeight)

Self &	SetEpsilon (double Epsilon)

Self &	SetHeavisideStepFunction (HeavisideStepFunctionType HeavisideStepFunction)

Self &	SetLambda1 (double Lambda1)

Self &	SetLambda2 (double Lambda2)

Self &	SetMaximumRMSError (double MaximumRMSError)

Self &	SetNumberOfIterations (uint32_t NumberOfIterations)

Self &	SetReinitializationSmoothingWeight (double ReinitializationSmoothingWeight)

Self &	SetUseImageSpacing (bool UseImageSpacing)

Self &	SetVolume (double Volume)

Self &	SetVolumeMatchingWeight (double VolumeMatchingWeight)

std::string	ToString () const

Self &	UseImageSpacingOff ()

Self &	UseImageSpacingOn ()

	~ScalarChanAndVeseDenseLevelSetImageFilter ()

Public Member Functions inherited from itk::simple::ImageFilter< 2 >
	ImageFilter ()

virtual	~ImageFilter ()=0

Public Member Functions inherited from itk::simple::ProcessObject
virtual void	Abort ()

virtual int	AddCommand (itk::simple::EventEnum event, itk::simple::Command &cmd)
	Add a Command Object to observer the event. More...

virtual float	GetProgress () const
	An Active Measurement of the progress of execution. More...

virtual bool	HasCommand (itk::simple::EventEnum event) const
	Query of this object has any registered commands for event. More...

	ProcessObject ()

virtual void	RemoveAllCommands ()
	Remove all registered commands. More...

virtual	~ProcessObject ()

virtual void	DebugOn ()

virtual void	DebugOff ()

virtual bool	GetDebug () const

virtual void	SetDebug (bool debugFlag)

virtual void	SetNumberOfThreads (unsigned int n)

virtual unsigned int	GetNumberOfThreads () const

Private Types
typedef Image(Self::*	MemberFunctionType) (const Image &image1, const Image &image2)

Private Member Functions
template<class TImageType >
Image	ExecuteInternal (const Image &image1, const Image &image2)

Private Attributes
double	m_AreaWeight

double	m_CurvatureWeight

uint32_t	m_ElapsedIterations

double	m_Epsilon

HeavisideStepFunctionType	m_HeavisideStepFunction

double	m_Lambda1

double	m_Lambda2

double	m_MaximumRMSError

nsstd::auto_ptr< detail::MemberFunctionFactory< MemberFunctionType > >	m_MemberFactory

uint32_t	m_NumberOfIterations

double	m_ReinitializationSmoothingWeight

double	m_RMSChange

bool	m_UseImageSpacing

double	m_Volume

double	m_VolumeMatchingWeight

Friends
struct	detail::MemberFunctionAddressor< MemberFunctionType >

Additional Inherited Members
Static Public Member Functions inherited from itk::simple::ProcessObject
static bool	GetGlobalDefaultDebug ()

static void	GlobalDefaultDebugOff ()

static void	GlobalDefaultDebugOn ()

static void	SetGlobalDefaultDebug (bool debugFlag)

static void	GlobalWarningDisplayOn ()

static void	GlobalWarningDisplayOff ()

static void	SetGlobalWarningDisplay (bool flag)

static bool	GetGlobalWarningDisplay ()

static void	SetGlobalDefaultNumberOfThreads (unsigned int n)

static unsigned int	GetGlobalDefaultNumberOfThreads ()

static double	GetGlobalDefaultCoordinateTolerance ()
	Access the global tolerance to determine congruent spaces. More...

static void	SetGlobalDefaultCoordinateTolerance (double)
	Access the global tolerance to determine congruent spaces. More...

static double	GetGlobalDefaultDirectionTolerance ()
	Access the global tolerance to determine congruent spaces. More...

static void	SetGlobalDefaultDirectionTolerance (double)
	Access the global tolerance to determine congruent spaces. More...

Protected Member Functions inherited from itk::simple::ProcessObject
virtual unsigned long	AddITKObserver (const itk::EventObject &, itk::Command *)

virtual itk::ProcessObject *	GetActiveProcess ()

virtual void	OnActiveProcessDelete ()

virtual void	onCommandDelete (const itk::simple::Command *cmd) throw ()

virtual void	PreUpdate (itk::ProcessObject *p)

virtual void	RemoveITKObserver (EventCommand &e)

Protected Member Functions inherited from itk::simple::NonCopyable
	NonCopyable ()

Static Protected Member Functions inherited from itk::simple::ImageFilter< 2 >
static void	FixNonZeroIndex (TImageType *img)

Static Protected Member Functions inherited from itk::simple::ProcessObject
template<class TImageType >
static TImageType::ConstPointer	CastImageToITK (const Image &img)

template<class TImageType >
static Image	CastITKToImage (TImageType *img)

template<class TPixelType , unsigned int VImageDimension, unsigned int VLength, template< typename, unsigned int > class TVector>
static Image	CastITKToImage (itk::Image< TVector< TPixelType, VLength >, VImageDimension > *img)

static const itk::EventObject &	GetITKEventObject (EventEnum e)

template<typename T >
static std::ostream &	ToStringHelper (std::ostream &os, const T &v)

static std::ostream &	ToStringHelper (std::ostream &os, const char &v)

static std::ostream &	ToStringHelper (std::ostream &os, const signed char &v)

static std::ostream &	ToStringHelper (std::ostream &os, const unsigned char &v)

Detailed Description

Dense implementation of the Chan and Vese multiphase level set image filter.

This code was adapted from the paper: "An active contour model without edges" T. Chan and L. Vese. In Scale-Space Theories in Computer Vision, pages 141-151, 1999.

Author: Mosaliganti K., Smith B., Gelas A., Gouaillard A., Megason S.

This code was taken from the Insight Journal paper: "Cell Tracking using Coupled Active Surfaces for Nuclei and Membranes" http://www.insight-journal.org/browse/publication/642 https://hdl.handle.net/10380/3055

That is based on the papers: "Level Set Segmentation: Active Contours without edge" http://www.insight-journal.org/browse/publication/322 https://hdl.handle.net/1926/1532

and

"Level set segmentation using coupled active surfaces" http://www.insight-journal.org/browse/publication/323 https://hdl.handle.net/1926/1533

Wiki Examples:

All Examples

Single-phase Chan And Vese Dense Field Level Set Segmentation
See also
itk::simple::ScalarChanAndVeseDenseLevelSet for the procedural interface

itk::ScalarChanAndVeseDenseLevelSetImageFilter for the Doxygen on the original ITK class.

Definition at line 66 of file sitkScalarChanAndVeseDenseLevelSetImageFilter.h.

Member Typedef Documentation

typedef Image(Self::* itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::MemberFunctionType) (const Image &image1, const Image &image2)

private

Setup for member function dispatching

Definition at line 222 of file sitkScalarChanAndVeseDenseLevelSetImageFilter.h.

typedef RealPixelIDTypeList itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::PixelIDTypeList

Define the pixels types supported by this filter

Definition at line 78 of file sitkScalarChanAndVeseDenseLevelSetImageFilter.h.

typedef ScalarChanAndVeseDenseLevelSetImageFilter itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::Self

Definition at line 68 of file sitkScalarChanAndVeseDenseLevelSetImageFilter.h.

Member Enumeration Documentation

enum itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::HeavisideStepFunctionType

Enumerator
AtanRegularizedHeaviside
SinRegularizedHeaviside
Heaviside

Definition at line 162 of file sitkScalarChanAndVeseDenseLevelSetImageFilter.h.

Constructor & Destructor Documentation

itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::ScalarChanAndVeseDenseLevelSetImageFilter ( )

Default Constructor that takes no arguments and initializes default parameters

itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::~ScalarChanAndVeseDenseLevelSetImageFilter ( )

Destructor

Member Function Documentation

Image itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::Execute	(	const Image &	image1,
		const Image &	image2
	)

Execute the filter on the input images

Image itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::Execute	(	const Image &	image1,
		const Image &	image2,
		double	maximumRMSError,
		uint32_t	numberOfIterations,
		double	lambda1,
		double	lambda2,
		double	epsilon,
		double	curvatureWeight,
		double	areaWeight,
		double	reinitializationSmoothingWeight,
		double	volume,
		double	volumeMatchingWeight,
		ScalarChanAndVeseDenseLevelSetImageFilter::HeavisideStepFunctionType	heavisideStepFunction,
		bool	useImageSpacing
	)

Execute the filter on the input images with the given parameters

template<class TImageType >

Image itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::ExecuteInternal	(	const Image &	image1,
		const Image &	image2
	)

private

double itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::GetAreaWeight ( ) const

inline

Definition at line 136 of file sitkScalarChanAndVeseDenseLevelSetImageFilter.h.

double itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::GetCurvatureWeight ( ) const

inline

Definition at line 128 of file sitkScalarChanAndVeseDenseLevelSetImageFilter.h.

uint32_t itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::GetElapsedIterations ( ) const

inline

Number of iterations run.

This is a measurement. Its value is updated in the Execute methods, so the value will only be valid after an execution.

Definition at line 193 of file sitkScalarChanAndVeseDenseLevelSetImageFilter.h.

double itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::GetEpsilon ( ) const

inline

Definition at line 120 of file sitkScalarChanAndVeseDenseLevelSetImageFilter.h.

HeavisideStepFunctionType itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::GetHeavisideStepFunction ( ) const

inline

Definition at line 170 of file sitkScalarChanAndVeseDenseLevelSetImageFilter.h.

double itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::GetLambda1 ( ) const

inline

Definition at line 104 of file sitkScalarChanAndVeseDenseLevelSetImageFilter.h.

double itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::GetLambda2 ( ) const

inline

Definition at line 112 of file sitkScalarChanAndVeseDenseLevelSetImageFilter.h.

double itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::GetMaximumRMSError ( ) const

inline

Definition at line 88 of file sitkScalarChanAndVeseDenseLevelSetImageFilter.h.

std::string itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::GetName ( ) const

inlinevirtual

Name of this class

Implements itk::simple::ProcessObject.

Definition at line 204 of file sitkScalarChanAndVeseDenseLevelSetImageFilter.h.

uint32_t itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::GetNumberOfIterations ( ) const

inline

Definition at line 96 of file sitkScalarChanAndVeseDenseLevelSetImageFilter.h.

double itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::GetReinitializationSmoothingWeight ( ) const

inline

Definition at line 144 of file sitkScalarChanAndVeseDenseLevelSetImageFilter.h.

double itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::GetRMSChange ( ) const

inline

The Root Mean Square of the levelset upon termination.

This is a measurement. Its value is updated in the Execute methods, so the value will only be valid after an execution.

Definition at line 201 of file sitkScalarChanAndVeseDenseLevelSetImageFilter.h.

bool itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::GetUseImageSpacing ( ) const

inline

Use the image spacing information in calculations. Use this option if you want derivatives in physical space. Default is UseImageSpacingOn.

Definition at line 186 of file sitkScalarChanAndVeseDenseLevelSetImageFilter.h.

double itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::GetVolume ( ) const

inline

Definition at line 152 of file sitkScalarChanAndVeseDenseLevelSetImageFilter.h.

double itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::GetVolumeMatchingWeight ( ) const

inline

Definition at line 160 of file sitkScalarChanAndVeseDenseLevelSetImageFilter.h.

Self& itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::SetAreaWeight ( double AreaWeight )

inline

Definition at line 132 of file sitkScalarChanAndVeseDenseLevelSetImageFilter.h.

Self& itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::SetCurvatureWeight ( double CurvatureWeight )

inline

Definition at line 124 of file sitkScalarChanAndVeseDenseLevelSetImageFilter.h.

Self& itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::SetEpsilon ( double Epsilon )

inline

Definition at line 116 of file sitkScalarChanAndVeseDenseLevelSetImageFilter.h.

Self& itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::SetHeavisideStepFunction ( HeavisideStepFunctionType HeavisideStepFunction )

inline

Definition at line 166 of file sitkScalarChanAndVeseDenseLevelSetImageFilter.h.

Self& itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::SetLambda1 ( double Lambda1 )

inline

Definition at line 100 of file sitkScalarChanAndVeseDenseLevelSetImageFilter.h.

Self& itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::SetLambda2 ( double Lambda2 )

inline

Definition at line 108 of file sitkScalarChanAndVeseDenseLevelSetImageFilter.h.

Self& itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::SetMaximumRMSError ( double MaximumRMSError )

inline

Definition at line 84 of file sitkScalarChanAndVeseDenseLevelSetImageFilter.h.

Self& itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::SetNumberOfIterations ( uint32_t NumberOfIterations )

inline

Definition at line 92 of file sitkScalarChanAndVeseDenseLevelSetImageFilter.h.

Self& itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::SetReinitializationSmoothingWeight ( double ReinitializationSmoothingWeight )

inline

Definition at line 140 of file sitkScalarChanAndVeseDenseLevelSetImageFilter.h.

Self& itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::SetUseImageSpacing ( bool UseImageSpacing )

inline

Use the image spacing information in calculations. Use this option if you want derivatives in physical space. Default is UseImageSpacingOn.

Definition at line 176 of file sitkScalarChanAndVeseDenseLevelSetImageFilter.h.

Self& itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::SetVolume ( double Volume )

inline

Definition at line 148 of file sitkScalarChanAndVeseDenseLevelSetImageFilter.h.

Self& itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::SetVolumeMatchingWeight ( double VolumeMatchingWeight )

inline

Definition at line 156 of file sitkScalarChanAndVeseDenseLevelSetImageFilter.h.

std::string itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::ToString ( ) const

virtual

Print ourselves out

Reimplemented from itk::simple::ProcessObject.

Self& itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::UseImageSpacingOff ( )

inline

Definition at line 180 of file sitkScalarChanAndVeseDenseLevelSetImageFilter.h.

Self& itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::UseImageSpacingOn ( )

inline

Set the value of UseImageSpacing to true or false respectfully.

Definition at line 179 of file sitkScalarChanAndVeseDenseLevelSetImageFilter.h.

Friends And Related Function Documentation

friend struct detail::MemberFunctionAddressor< MemberFunctionType >

friend

Definition at line 227 of file sitkScalarChanAndVeseDenseLevelSetImageFilter.h.

Member Data Documentation

double itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::m_AreaWeight

private

Definition at line 245 of file sitkScalarChanAndVeseDenseLevelSetImageFilter.h.

double itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::m_CurvatureWeight

private

Definition at line 243 of file sitkScalarChanAndVeseDenseLevelSetImageFilter.h.

uint32_t itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::m_ElapsedIterations

private

Definition at line 256 of file sitkScalarChanAndVeseDenseLevelSetImageFilter.h.

double itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::m_Epsilon

private

Definition at line 241 of file sitkScalarChanAndVeseDenseLevelSetImageFilter.h.

HeavisideStepFunctionType itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::m_HeavisideStepFunction

private

Definition at line 253 of file sitkScalarChanAndVeseDenseLevelSetImageFilter.h.

double itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::m_Lambda1

private

Definition at line 237 of file sitkScalarChanAndVeseDenseLevelSetImageFilter.h.

double itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::m_Lambda2

private

Definition at line 239 of file sitkScalarChanAndVeseDenseLevelSetImageFilter.h.

double itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::m_MaximumRMSError

private

Definition at line 233 of file sitkScalarChanAndVeseDenseLevelSetImageFilter.h.

nsstd::auto_ptr<detail::MemberFunctionFactory<MemberFunctionType> > itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::m_MemberFactory

private

Definition at line 229 of file sitkScalarChanAndVeseDenseLevelSetImageFilter.h.

uint32_t itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::m_NumberOfIterations

private

Definition at line 235 of file sitkScalarChanAndVeseDenseLevelSetImageFilter.h.

double itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::m_ReinitializationSmoothingWeight

private

Definition at line 247 of file sitkScalarChanAndVeseDenseLevelSetImageFilter.h.

double itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::m_RMSChange

private

Definition at line 258 of file sitkScalarChanAndVeseDenseLevelSetImageFilter.h.

bool itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::m_UseImageSpacing

private

Definition at line 254 of file sitkScalarChanAndVeseDenseLevelSetImageFilter.h.

double itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::m_Volume

private

Definition at line 249 of file sitkScalarChanAndVeseDenseLevelSetImageFilter.h.

double itk::simple::ScalarChanAndVeseDenseLevelSetImageFilter::m_VolumeMatchingWeight

private

Definition at line 251 of file sitkScalarChanAndVeseDenseLevelSetImageFilter.h.

The documentation for this class was generated from the following file:

sitkScalarChanAndVeseDenseLevelSetImageFilter.h

Public Types

Public Member Functions

Private Types

Private Member Functions

Private Attributes

Friends

Additional Inherited Members

Detailed Description

Member Typedef Documentation

Member Enumeration Documentation

Constructor & Destructor Documentation

Member Function Documentation

Friends And Related Function Documentation

Member Data Documentation