SimpleIO/SimpleIO.py

#!/usr/bin/env python
# =========================================================================
#
#  Copyright NumFOCUS
#
#  Licensed under the Apache License, Version 2.0 (the "License");
#  you may not use this file except in compliance with the License.
#  You may obtain a copy of the License at
#
#         http://www.apache.org/licenses/LICENSE-2.0.txt
#
#  Unless required by applicable law or agreed to in writing, software
#  distributed under the License is distributed on an "AS IS" BASIS,
#  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
#  See the License for the specific language governing permissions and
#  limitations under the License.
#
# =========================================================================
 
 
 
"""
These examples are used in the I/O documentation page. The IO.rst file
pulls the code examples based their line numbers in this file. So any
change in the line numbers of the code below will break the I/O page.
"""
 
import sys
 
# A simple image input/output example
#
def example1(inputImageFileName, outputImageFileName):
    """ A Simple Image Input/Output Example """
 
    import SimpleITK as sitk
 
    #START_OO_IMAGE_READER_WRITER_EXAMPLE
    reader = sitk.ImageFileReader()
    reader.SetImageIO("PNGImageIO")
    reader.SetFileName(inputImageFileName)
    image = reader.Execute()
 
    writer = sitk.ImageFileWriter()
    writer.SetFileName(outputImageFileName)
    writer.Execute(image)
    #END_OO_IMAGE_READER_WRITER_EXAMPLE
 
 
# A simple procedural image input/output example
#
def example2(inputImageFileName, outputImageFileName):
    """ A Simple Procedural Image Input/Output Example """
 
    import SimpleITK as sitk
 
    #START_PROCEDURAL_IMAGE_READER_WRITER_EXAMPLE
    image = sitk.ReadImage(inputImageFileName, imageIO="PNGImageIO")
    sitk.WriteImage(image, outputImageFileName)
    #END_PROCEDURAL_IMAGE_READER_WRITER_EXAMPLE
 
 
# A simple transform input/output example
#
def example3():
    """ A Simple Transform Input/Output Example """
 
    import SimpleITK as sitk
 
    #START_PROCEDURAL_TRANSFORM_READER_WRITER_EXAMPLE
    basic_transform = sitk.Euler2DTransform()
    basic_transform.SetTranslation((2, 3))
 
    file_name = "euler2D_py.tfm"
    sitk.WriteTransform(basic_transform, file_name)
    read_result = sitk.ReadTransform(file_name)
 
    assert isinstance(read_result, sitk.Euler2DTransform)
    #END_PROCEDURAL_TRANSFORM_READER_WRITER_EXAMPLE
 
 
if __name__ == "__main__":
 
    if len(sys.argv) < 3:
        print("Usage: SimpleIO <input> <output>")
        sys.exit(1)
 
    example1(sys.argv[1], sys.argv[2])
    example2(sys.argv[1], sys.argv[2])
    example3()
    sys.exit(0)