SimpleITK  
Python/SimpleGaussianProcedural.py
1 #!/usr/bin/env python
2 # =========================================================================
3 #
4 # Copyright NumFOCUS
5 #
6 # Licensed under the Apache License, Version 2.0 (the "License");
7 # you may not use this file except in compliance with the License.
8 # You may obtain a copy of the License at
9 #
10 # http://www.apache.org/licenses/LICENSE-2.0.txt
11 #
12 # Unless required by applicable law or agreed to in writing, software
13 # distributed under the License is distributed on an "AS IS" BASIS,
14 # WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
15 # See the License for the specific language governing permissions and
16 # limitations under the License.
17 #
18 # =========================================================================
19 
20 
21 """ Example of the SmoothRecursiveGaussian function in SimpleITK """
22 
23 import os
24 import sys
25 
26 import SimpleITK as sitk
27 
28 if len(sys.argv) < 4:
29  print(f"Usage: {sys.argv[0]} <input> <sigma> <output>")
30  sys.exit(1)
31 
32 image = sitk.ReadImage(sys.argv[1])
33 
34 pixelID = image.GetPixelID()
35 
36 image = sitk.SmoothingRecursiveGaussian(image, float(sys.argv[2]))
37 
38 sitk.WriteImage(sitk.Cast(image, pixelID), sys.argv[3])
39 
40 if "SITK_NOSHOW" not in os.environ:
41  sitk.Show(sitk.Cast(image, pixelID), "Simple Gaussian Procedural")
itk::simple::SmoothingRecursiveGaussian
Image SmoothingRecursiveGaussian(const Image &image1, std::vector< double > sigma=std::vector< double >(3, 1.0), bool normalizeAcrossScale=false)
Computes the smoothing of an image by convolution with the Gaussian kernels implemented as IIR filter...
itk::simple::Show
void SITKIO_EXPORT Show(const Image &image, const std::string &title="", const bool debugOn=ProcessObject::GetGlobalDefaultDebug())
itk::simple::Cast
Image Cast(const Image &image, PixelIDValueEnum pixelID)
itk::simple::WriteImage
SITKIO_EXPORT void WriteImage(const Image &image, const std::vector< PathType > &fileNames, bool useCompression=false, int compressionLevel=-1)
WriteImage is a procedural interface to the ImageSeriesWriter. class which is convenient for many ima...
itk::simple::ReadImage
SITKIO_EXPORT Image ReadImage(const std::vector< PathType > &fileNames, PixelIDValueEnum outputPixelType=sitkUnknown, const std::string &imageIO="")
ReadImage is a procedural interface to the ImageSeriesReader class which is convenient for most image...