SimpleITK  
DicomSeriesReader/DicomSeriesReader.java
/*=========================================================================
*
* Copyright NumFOCUS
*
* Licensed under the Apache License, Version 2.0 (the "License");
* you may not use this file except in compliance with the License.
* You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0.txt
*
* Unless required by applicable law or agreed to in writing, software
* distributed under the License is distributed on an "AS IS" BASIS,
* WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
* See the License for the specific language governing permissions and
* limitations under the License.
*
*=========================================================================*/
import org.itk.simple.*;
public class DicomSeriesReader {
public static void main(String[] args) {
if (args.length < 2) {
System.out.println("Usage: DicomSeriesReader <input_directory> <output_file>");
System.exit(1);
}
System.out.println("Reading Dicom directory: " + args[0]);
ImageSeriesReader imageSeriesReader = new ImageSeriesReader();
final VectorString dicomNames = ImageSeriesReader.getGDCMSeriesFileNames(args[0]);
imageSeriesReader.setFileNames(dicomNames);
Image image = imageSeriesReader.execute();
VectorUInt32 size = image.getSize();
System.out.println("Image size: " + size.get(0) + " " + size.get(1) + " " + size.get(2));
System.out.println("Writing " + args[1]);
SimpleITK.writeImage(image, args[1]);
if (System.getenv("SITK_NOSHOW") == null) {
SimpleITK.show( image, "Hello World: Java", true );
}
}
}